BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0562200 Os03g0562200|AK072991
(305 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48880.1 | chr3:18127873-18129008 FORWARD LENGTH=310 74 1e-13
AT4G08980.1 | chr4:5758993-5760108 FORWARD LENGTH=318 66 2e-11
AT4G05475.1 | chr4:2765962-2767957 REVERSE LENGTH=310 52 5e-07
AT4G05490.1 | chr4:2771044-2772252 REVERSE LENGTH=308 50 1e-06
>AT3G48880.1 | chr3:18127873-18129008 FORWARD LENGTH=310
Length = 309
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 121/282 (42%), Gaps = 47/282 (16%)
Query: 5 SPPVRPWADLQHDLLVMIMSRVGLPDLLSGGATRACSAWRASARDPLVWRRVDLRDWAVL 64
S +R W +L D+LV I + + +L SG A C WRA+ DP++W+ VDL +
Sbjct: 7 SRRLRRWEELDTDILVRIFQKFSVFELTSGLA-HVCRGWRAACCDPILWKTVDLSN---- 61
Query: 65 TSXXXXXXXXXXXXXXXXXXXVPLQ----------AALCSVLEIVVRRAAGRMEALLL-- 112
+PL+ AL +L++ + + G L+
Sbjct: 62 --------------MRSSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHF 107
Query: 113 PEFADEEHLLFLAQRNPNLHYFSLPA-TCITYDQFRKAIDKLQFLKGMAVDEGLINHDVL 171
F ++ L + A+R P L LPA I KAI + L+ + + +L
Sbjct: 108 NLFLSDDQLTYTAERCPGLRRVVLPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLL 167
Query: 172 SHVHQCCPDFLELKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEEL 231
+ + + C +F ELK+ + + A+ + LP +K L I S + A++K LD L L
Sbjct: 168 TEIAKNCKNFKELKIMGPF-EVFFANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSL 226
Query: 232 EYLDI--------SGYE------TSAISSAVLQKASRLNIFI 259
E L+I SG++ + +++K +RL F+
Sbjct: 227 EVLNISHSHLVEYSGWQPQQKVIVRELDKTIMEKTARLKKFL 268
>AT4G08980.1 | chr4:5758993-5760108 FORWARD LENGTH=318
Length = 317
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 34/240 (14%)
Query: 9 RPWADLQHDLLVMIMSRVGLPDLLSGGATRACSAWRASARDPLVWRRVDLRDWAVLTSXX 68
R W +L D L +I S + L ++L+ R C AW + P W+ +D+ W+
Sbjct: 8 RHWDELIPDALGLIFSHLPLQEVLTV-VPRVCKAWNRAVTGPYCWQEIDIELWS------ 60
Query: 69 XXXXXXXXXXXXXXXXXVPLQAALCSVLEIVVRRAAGRMEALLLPEFADEEHLLFLAQRN 128
L +LE+++ R+AG + L + ++ F+AQ
Sbjct: 61 ---------------NRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHA 105
Query: 129 PNLHYFSLPATCITYDQFRKAIDKLQFLK----------GMAVDEGLINHDVLSHVHQCC 178
+L +P + +T +KL L G + + H + + C
Sbjct: 106 GSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKH--CKSLREFC 163
Query: 179 PDFLELKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDISG 238
+ L V ++ ++ A I N++P+LK+LEI +S ++K L C LE+L++ G
Sbjct: 164 RNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRG 223
>AT4G05475.1 | chr4:2765962-2767957 REVERSE LENGTH=310
Length = 309
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 48/246 (19%)
Query: 11 WADLQHDLLVMIMSRVGLPDLLSGGATRACSAWRASARDPLVWRRVDLRDWAVLTSXXXX 70
W DL +L I+ R+ + D+L A + C AWR +DP +WR+++LRD +
Sbjct: 40 WVDLPPELTTSILLRLSVTDILDN-ARKLCRAWRRICKDPSMWRKINLRDCLM------- 91
Query: 71 XXXXXXXXXXXXXXXVPLQAALCSVLEIVVRRAAGRMEALLLPEFADEEHLLFLAQRNPN 130
+ S+ +V + G + + + F + L ++ R+ N
Sbjct: 92 -----------------YEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCN 134
Query: 131 LHYFSLPA-TCITYDQFRKAIDKLQFLKGMAVDEGLINHDVLSHVHQCCPDFLELKVFAL 189
L + +T I+KL L+ + + I D L + CP LK+ +L
Sbjct: 135 LKSLGISIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSL 193
Query: 190 ------------YV------DEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLD-CLEE 230
Y+ D+ +A I S+P+L+ L++ + ++ + LD C
Sbjct: 194 GSELAHDISQVGYIPLLECDDDALA--IAESMPKLRHLQLMGNGLTNTGLNAILDGCPHL 251
Query: 231 LEYLDI 236
E+LD+
Sbjct: 252 EEHLDV 257
>AT4G05490.1 | chr4:2771044-2772252 REVERSE LENGTH=308
Length = 307
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 43/255 (16%)
Query: 2 ASSSPPV------------RP--WADLQHDLLVMIMSRVGLPDLLSGGATRACSAWRASA 47
+SSSPP+ +P WA+L DLL I+ R+ ++L A + C +WR +
Sbjct: 4 SSSSPPLATSQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILEN-ARKVCRSWRRVS 62
Query: 48 RDPLVWRRVDLRDWAVLTSXXXXXXXXXXXXXXXXXXXVPLQAALCSVLEIVVRRAAGRM 107
+DPL+WRR+D+R+ L A+ + VV + G +
Sbjct: 63 KDPLIWRRIDMRNLRRLYCIY----------------------AMEACCRHVVDLSQGGL 100
Query: 108 EALLLPE--FADEEHLLFLAQRNPNLHYFSLPATCITYDQFRKAIDKLQFLKGMAVDEGL 165
+ + F L ++A+R+ NL + IT +AI KL L+ + +
Sbjct: 101 LEFNIDQWRFQTTSLLNYMAERSSNLRRLRVKGGQITSVGIFEAIVKLPLLEELELLYCS 160
Query: 166 INHDVLSHVHQCCPDFLELKVFALYV----DEEMASIICNSLPRLKKLEIPNSDMSCAAI 221
I + + Q CP+ LK+ + + A I +++P L L++ ++ ++ +
Sbjct: 161 IEEEHFKTIGQACPNLKTLKLVGFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGL 220
Query: 222 IKFLDCLEELEYLDI 236
LD LE LD+
Sbjct: 221 NAILDGCPHLECLDL 235
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,527,930
Number of extensions: 246912
Number of successful extensions: 748
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 5
Length of query: 305
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 207
Effective length of database: 8,419,801
Effective search space: 1742898807
Effective search space used: 1742898807
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)