Os10g0502900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os10g0502900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.51 | 0.242 | 11.8 | 1.11 | 0.613 | -0.71 | -0.112 | -1.69 | 0.388 | 14.3 | 1.211 | 5638 | -- | -- |
| 28.55 | 0.249 | 11.8 | 0.844 | 0.588 | -0.424 | -0.192 | -- | 0.338 | 14.3 | 2.643 | 5515 | -- | -- |
| 26.43 | 0.239 | 11.8 | 1.08 | 0.619 | -0.777 | -- | -1.83 | 0.388 | 14 | 0.8992 | 5586 | -- | -- |
| 28.78 | 0.25 | 11.8 | 0.834 | 0.587 | -0.429 | -- | -- | 0.337 | 14 | 2.666 | 5471 | -- | -- |
| 30.86 | 0.259 | 11.8 | 0.934 | -- | -1.11 | -- | -0.876 | 0.344 | -- | 1.645 | 3300 | -- | -- |
| 31.41 | 0.263 | 11.8 | 0.947 | 0.555 | -- | -0.289 | -- | 0.421 | 14.8 | -- | -- | -- | -- |
| 31.7 | 0.264 | 11.8 | 0.94 | 0.555 | -- | -- | -- | 0.419 | 14.9 | -- | -- | -- | -- |
| 30.42 | 0.257 | 11.8 | 0.814 | -- | -1.01 | -- | -- | 0.285 | -- | 2.53 | 3293 | -- | -- |
| 31.19 | 0.26 | 11.8 | -- | 0.506 | -0.723 | -- | -- | 0.268 | 15 | 7.114e-05 | 47520 | -- | -- |
| 49.43 | 0.329 | 11.8 | 0.916 | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
| 54.98 | 0.347 | 11.8 | -- | 0.536 | -- | -- | -- | 0.315 | 14.9 | -- | -- | -- | -- |
| 46.06 | 0.316 | 11.8 | -- | -- | -1.05 | -- | -- | 0.243 | -- | 7.059e-05 | 3308 | -- | -- |
| 71.58 | 0.395 | 11.8 | -- | -- | -- | -- | -- | 0.303 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.09 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 2 | 25.20 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 4 | 25.22 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 7 | 25.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 25 | 25.42 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 28 | 25.43 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 40 | 25.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 54 | 25.50 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 55 | 25.50 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 59 | 25.50 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 60 | 25.51 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 74 | 25.53 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 82 | 25.54 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 94 | 25.55 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 97 | 25.56 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 104 | 25.56 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 145 | 25.59 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 157 | 25.59 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 185 | 25.61 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 1 | NA |
| 187 | 25.61 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 189 | 25.61 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 254 | 25.63 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 279 | 25.64 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 1 | NA |
| 313 | 25.64 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 3 | 15 |
| 314 | 25.64 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 332 | 25.65 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 382 | 25.65 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 410 | 25.66 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 22 | NA |
| 413 | 25.66 | temperature | 20 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 431 | 25.66 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 483 | 25.67 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 487 | 25.67 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 20 | NA |
| 644 | 25.69 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 17 | NA |
| 647 | 25.69 | atmosphere | 1005 | 14400 | > th | dose dependent | no | NA | NA |
| 649 | 25.69 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 693 | 25.69 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 831 | 25.71 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 14 | NA |
| 872 | 25.72 | atmosphere | 1010 | 14400 | < th | dose independent | no | NA | NA |
| 914 | 25.72 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 12 | NA |
| 993 | 25.73 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 10 | 23 |