BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0417900 Os03g0417900|AK103622
         (702 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0417900  Similar to ARE1-like protein                       1349   0.0  
Os10g0488300  Vps52/Sac2 family protein                           790   0.0  

>Os03g0417900 Similar to ARE1-like protein
          Length = 702

 Score = 1349 bits (3492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/702 (94%), Positives = 666/702 (94%)

Query: 1   MDXXXXXXXXHDGQRERFXXXXXXXXXXXXXXXXSDEDESLEGLRQELDDCKDDEEVANI 60
           MD        HDGQRERF                SDEDESLEGLRQELDDCKDDEEVANI
Sbjct: 1   MDAAPAAAEAHDGQRERFDLGVLVGDLALDEDVASDEDESLEGLRQELDDCKDDEEVANI 60

Query: 61  LANGIKLRDYTKGVENNIRQIELDSIQDYIGESENLVSLHDQIRDCDNILSQMETVLTGF 120
           LANGIKLRDYTKGVENNIRQIELDSIQDYIGESENLVSLHDQIRDCDNILSQMETVLTGF
Sbjct: 61  LANGIKLRDYTKGVENNIRQIELDSIQDYIGESENLVSLHDQIRDCDNILSQMETVLTGF 120

Query: 121 QTEIGSISSEIKVLQEKSMDMGLKLKNRKAAESKLSKFVEDIIVPPRMIDIIVDGEVNDE 180
           QTEIGSISSEIKVLQEKSMDMGLKLKNRKAAESKLSKFVEDIIVPPRMIDIIVDGEVNDE
Sbjct: 121 QTEIGSISSEIKVLQEKSMDMGLKLKNRKAAESKLSKFVEDIIVPPRMIDIIVDGEVNDE 180

Query: 181 YMKTLETLSRKIKFIEVDAMVKSSKALKDVQPEVERLRQKAVSKIFEFVIQKFYALRKPK 240
           YMKTLETLSRKIKFIEVDAMVKSSKALKDVQPEVERLRQKAVSKIFEFVIQKFYALRKPK
Sbjct: 181 YMKTLETLSRKIKFIEVDAMVKSSKALKDVQPEVERLRQKAVSKIFEFVIQKFYALRKPK 240

Query: 241 TNIQILQQSVLLKYKYTIVFLKEHAKEIYAEVRAAYIDTMNKVLSAHFRAYIQALEKLQL 300
           TNIQILQQSVLLKYKYTIVFLKEHAKEIYAEVRAAYIDTMNKVLSAHFRAYIQALEKLQL
Sbjct: 241 TNIQILQQSVLLKYKYTIVFLKEHAKEIYAEVRAAYIDTMNKVLSAHFRAYIQALEKLQL 300

Query: 301 DIATSTDLLGVETRSTGFLFSMGKESLKTRSSVFALGERINILKEIDQPALIPHIAEAKS 360
           DIATSTDLLGVETRSTGFLFSMGKESLKTRSSVFALGERINILKEIDQPALIPHIAEAKS
Sbjct: 301 DIATSTDLLGVETRSTGFLFSMGKESLKTRSSVFALGERINILKEIDQPALIPHIAEAKS 360

Query: 361 QKYPYEVLFRSLQKLLIDTATSEYLFSDDFFGEESLFNDIFAGPIQVVDEHFNAVLLNCY 420
           QKYPYEVLFRSLQKLLIDTATSEYLFSDDFFGEESLFNDIFAGPIQVVDEHFNAVLLNCY
Sbjct: 361 QKYPYEVLFRSLQKLLIDTATSEYLFSDDFFGEESLFNDIFAGPIQVVDEHFNAVLLNCY 420

Query: 421 DAIGIMLMIRIIHQHQLIMFKRRIPCLDSYLDKVNLSLWPRFKMVFDLHLNSLRNANVKT 480
           DAIGIMLMIRIIHQHQLIMFKRRIPCLDSYLDKVNLSLWPRFKMVFDLHLNSLRNANVKT
Sbjct: 421 DAIGIMLMIRIIHQHQLIMFKRRIPCLDSYLDKVNLSLWPRFKMVFDLHLNSLRNANVKT 480

Query: 481 LWEDDVHPHYVMRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAVEELLVKLAKMFPKQK 540
           LWEDDVHPHYVMRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAVEELLVKLAKMFPKQK
Sbjct: 481 LWEDDVHPHYVMRRYAEFTASLVHLNVEYGDGQLDLNLERLRMAVEELLVKLAKMFPKQK 540

Query: 541 LQTVFLINNYDLTISILKEAGTEGGKAQVHFEEVLKSNISVYVEELLLEHFSDLIKFVKS 600
           LQTVFLINNYDLTISILKEAGTEGGKAQVHFEEVLKSNISVYVEELLLEHFSDLIKFVKS
Sbjct: 541 LQTVFLINNYDLTISILKEAGTEGGKAQVHFEEVLKSNISVYVEELLLEHFSDLIKFVKS 600

Query: 601 RPSEDTXXXXXXXXXXXXEPLVKDFAGRWKAAIELMHKDVITSFSNFLCGMEILKAALTQ 660
           RPSEDT            EPLVKDFAGRWKAAIELMHKDVITSFSNFLCGMEILKAALTQ
Sbjct: 601 RPSEDTASSSDKASVSDVEPLVKDFAGRWKAAIELMHKDVITSFSNFLCGMEILKAALTQ 660

Query: 661 LLLYYTRITECVKKINGGSALNKDLVSISSILYEIKKYSRTF 702
           LLLYYTRITECVKKINGGSALNKDLVSISSILYEIKKYSRTF
Sbjct: 661 LLLYYTRITECVKKINGGSALNKDLVSISSILYEIKKYSRTF 702



>Os10g0488300 Vps52/Sac2 family protein
          Length = 690

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/668 (56%), Positives = 507/668 (75%), Gaps = 1/668 (0%)

Query: 35  SDEDESLEGLRQELDDCKDDEEVANILANGIKLRDYTKGVENNIRQIELDSIQDYIGESE 94
           + ED SL+GL +EL++ KD + + +ILANG K RD    VE N+   E D IQDY+ +S+
Sbjct: 24  ASEDMSLDGLDEELEEHKDYDVLISILANGEKQRDMATLVEGNLGHAEQDLIQDYVEDSD 83

Query: 95  NLVSLHDQIRDCDNILSQMETVLTGFQTEIGSISSEIKVLQEKSMDMGLKLKNRKAAESK 154
           NLV LHDQI DCD ILSQ+ ++LTGFQ  IGSI+SE++ LQE+S+D+ ++LKNRK  E+K
Sbjct: 84  NLVLLHDQIHDCDIILSQIGSLLTGFQVHIGSINSELRSLQERSLDISVRLKNRKLVETK 143

Query: 155 LSKFVEDIIVPPRMIDIIVDGEVNDEYMKTLETLSRKIKFIEVDAMVKSSKALKDVQPEV 214
           L+KFVE+I+ PP ++ +I+DGE+ND Y K+LE LS+K++F +VD M+ +S +LKD++PE+
Sbjct: 144 LAKFVEEIVAPPSLVTVIIDGEINDGYAKSLEILSKKLRFSQVDPMINASNSLKDIKPEL 203

Query: 215 ERLRQKAVSKIFEFVIQKFYALRKPKTNIQILQQSVLLKYKYTIVFLKEHAKEIYAEVRA 274
           ERL QKA+ K+ +++ + F+++RKP TNIQILQQ+++ KY+Y I+FL+EH  ++Y +VRA
Sbjct: 204 ERLLQKALCKVSDYLTELFFSMRKPGTNIQILQQNMVQKYRYLILFLREHGSKVYTDVRA 263

Query: 275 AYIDTMNKVLSAHFRAYIQALEKLQLDIATSTDLLGVETRSTGFLFSMGKESLKTRSSVF 334
            Y DTMNKVLSAHF+ YI+ALEKL+LDI  S+DL G +T     L S G+E L+    +F
Sbjct: 264 TYADTMNKVLSAHFQVYIEALEKLKLDIGVSSDLTGYDTNIID-LISRGREHLRNHRFMF 322

Query: 335 ALGERINILKEIDQPALIPHIAEAKSQKYPYEVLFRSLQKLLIDTATSEYLFSDDFFGEE 394
           +LGER +ILKEID+P L+PHI+E    KYPYEV+FRS+QKLL+DTA+SEYLF   FFGEE
Sbjct: 323 SLGERASILKEIDRPGLVPHISEVNPVKYPYEVIFRSIQKLLMDTASSEYLFIKAFFGEE 382

Query: 395 SLFNDIFAGPIQVVDEHFNAVLLNCYDAIGIMLMIRIIHQHQLIMFKRRIPCLDSYLDKV 454
           SLF  +F GP +V++ H +  L N +DA+ +MLMI I  +HQL+M  RR+PCLD+YLDKV
Sbjct: 383 SLFYQVFQGPFKVINGHLDHTLRNYHDAVCLMLMICITRKHQLVMLNRRLPCLDAYLDKV 442

Query: 455 NLSLWPRFKMVFDLHLNSLRNANVKTLWEDDVHPHYVMRRYAEFTASLVHLNVEYGDGQL 514
            + LWPRFK VFD++L SL   + K LW D  HPH+++R Y EFTASL+ LN E GDGQL
Sbjct: 443 LIYLWPRFKTVFDMYLQSLYRCDTKLLWVDGSHPHHIVRCYVEFTASLIQLNAECGDGQL 502

Query: 515 DLNLERLRMAVEELLVKLAKMFPKQKLQTVFLINNYDLTISILKEAGTEGGKAQVHFEEV 574
           D+NLERLR+AV+ LL +LA+ F   K Q +FL+NNYD+TIS+LKEAG E  K Q +FEE 
Sbjct: 503 DMNLERLRLAVDNLLGRLAENFANPKTQHLFLLNNYDMTISVLKEAGDEANKLQSYFEEK 562

Query: 575 LKSNISVYVEELLLEHFSDLIKFVKSRPSEDTXXXXXXXXXXXXEPLVKDFAGRWKAAIE 634
           L+SN+  + +ELL+EHF DLIKFV+SR SED             EP+VK+FA  WK A+E
Sbjct: 563 LESNMISFADELLMEHFKDLIKFVRSRVSEDLILYTECPSIADVEPIVKNFAVTWKTALE 622

Query: 635 LMHKDVITSFSNFLCGMEILKAALTQLLLYYTRITECVKKINGGSALNKDLVSISSILYE 694
           LMH +V+TS SN L GMEILKAA+ QLL  Y R++ECVK I GGS LN++LVSI+SI YE
Sbjct: 623 LMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECVKIIPGGSTLNRNLVSITSISYE 682

Query: 695 IKKYSRTF 702
           ++KYS T 
Sbjct: 683 MRKYSITL 690



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,715,106
Number of extensions: 686895
Number of successful extensions: 1965
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1963
Number of HSP's successfully gapped: 2
Length of query: 702
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 594
Effective length of database: 11,396,689
Effective search space: 6769633266
Effective search space used: 6769633266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)