BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0411600 Os03g0411600|Os03g0411600
         (178 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0411600  Protein of unknown function DUF1195 family pro...   188   1e-48
Os07g0607500  Protein of unknown function DUF1195 family pro...   103   5e-23

>Os03g0411600 Protein of unknown function DUF1195 family protein
          Length = 178

 Score =  188 bits (478), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 102/164 (62%)

Query: 15  TKITIPYYSXXXXXXXXXXXXXXXRYKVXXXXXXXXXXXXXXXXXXXXXXXXXGRFLLAA 74
           TKITIPYYS               RYKV                         GRFLLAA
Sbjct: 15  TKITIPYYSAAAGAGEAGPPFGKGRYKVWALAAIALLALWSMSAASASLRWSSGRFLLAA 74

Query: 75  TXXXXXXXXXXXXXXXXXXXXXXKLVGRMWDMYTRTGDEVRLPRFWQEAFEAAYEELAGD 134
           T                      KLVGRMWDMYTRTGDEVRLPRFWQEAFEAAYEELAGD
Sbjct: 75  TASEDLDAPLLDDLDSLEMEEREKLVGRMWDMYTRTGDEVRLPRFWQEAFEAAYEELAGD 134

Query: 135 DMQVRDAAISEIARMSAHRLELEQPVNEEEKTRSNEHGSPKLKK 178
           DMQVRDAAISEIARMSAHRLELEQPVNEEEKTRSNEHGSPKLKK
Sbjct: 135 DMQVRDAAISEIARMSAHRLELEQPVNEEEKTRSNEHGSPKLKK 178



>Os07g0607500 Protein of unknown function DUF1195 family protein
          Length = 164

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 98  KLVGRMWDMYTRTG-DEVRLPRFWQEAFEAAYEELAGDDMQVRDAAISEIARMSAHRLEL 156
           KLV RMWD+YTRTG D VRLPRFWQEAFEAAYEELAGDD Q  + A+SEIARMS HR EL
Sbjct: 98  KLVRRMWDVYTRTGVDRVRLPRFWQEAFEAAYEELAGDDTQASETAVSEIARMSVHRPEL 157

Query: 157 EQPVNE 162
           EQ  N+
Sbjct: 158 EQSSNK 163



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,252,443
Number of extensions: 96951
Number of successful extensions: 263
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 84
Effective length of database: 12,127,685
Effective search space: 1018725540
Effective search space used: 1018725540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)