Os07g0607500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1195 family protein.
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Os07g0607500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1195 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 245.71 | 0.736 | 4.6 | -2 | 0.834 | 1.93 | 0.634 | -5.54 | -1.01 | 18.4 | 24.87 | 1462 | -- | -- |
| 258.53 | 0.749 | 4.42 | -0.421 | 0.928 | 1.44 | 0.85 | -- | -0.627 | 18.1 | 24.61 | 1350 | -- | -- |
| 246.65 | 0.731 | 4.6 | -2 | 0.841 | 1.94 | -- | -5.49 | -1.01 | 18.3 | 24.77 | 1460 | -- | -- |
| 258.83 | 0.749 | 4.39 | -0.464 | 0.588 | 1.68 | -- | -- | -0.539 | 18 | 25.46 | 2000 | -- | -- |
| 261.72 | 0.753 | 4.59 | -2.06 | -- | 2.37 | -- | -6.63 | -1.03 | -- | 25.03 | 1952 | -- | -- |
| 338.99 | 0.863 | 4.37 | 0.0771 | 0.816 | -- | 0.609 | -- | -0.411 | 18.9 | -- | -- | -- | -- |
| 339.9 | 0.863 | 4.36 | 0.0674 | 0.819 | -- | -- | -- | -0.409 | 18.7 | -- | -- | -- | -- |
| 275.58 | 0.773 | 4.38 | -0.481 | -- | 1.76 | -- | -- | -0.584 | -- | 25 | 1999 | -- | -- |
| 262.83 | 0.755 | 4.37 | -- | 0.601 | 1.57 | -- | -- | -0.458 | 18 | 26.03 | 2009 | -- | -- |
| 374.95 | 0.905 | 4.35 | 0.0487 | -- | -- | -- | -- | -0.425 | -- | -- | -- | -- | -- |
| 340.02 | 0.863 | 4.37 | -- | 0.818 | -- | -- | -- | -0.416 | 18.7 | -- | -- | -- | -- |
| 281.04 | 0.781 | 4.37 | -- | -- | 1.68 | -- | -- | -0.528 | -- | 25.35 | 1997 | -- | -- |
| 375.02 | 0.904 | 4.35 | -- | -- | -- | -- | -- | -0.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.97 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 5 | 242.79 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 7 | 242.91 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 13 |
| 13 | 243.16 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 14 | 243.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 18 | 243.26 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 21 | 243.31 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 27 | 243.40 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 28 | 243.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 29 | 243.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 19 |
| 30 | 243.46 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 32 | 243.46 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 57 | 243.65 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 67 | 243.76 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 81 | 243.91 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 236 | 245.15 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 237 | 245.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 17 |
| 269 | 245.29 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 296 | 245.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 380 | 245.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 391 | 245.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 399 | 245.82 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 495 | 246.27 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 553 | 246.56 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 594 | 246.78 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 22 |
| 599 | 246.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 610 | 246.84 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 695 | 247.25 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 725 | 247.41 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 728 | 247.42 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 841 | 248.19 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 872 | 248.32 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 881 | 248.36 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 918 | 248.49 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 924 | 248.54 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |