BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0400700 Os03g0400700|Os03g0400700
         (153 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0400700  Late embryogenesis abundant protein 3 family p...   265   8e-72
Os07g0478700                                                       66   1e-11

>Os03g0400700 Late embryogenesis abundant protein 3 family protein
          Length = 153

 Score =  265 bits (678), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 134/153 (87%), Positives = 134/153 (87%)

Query: 1   MADGSLSPLAAVNTASAAIADAVREAFQPSARHDVDPSTAANVVDSEGVMASNATRKALI 60
           MADGSLSPLAAVNTASAAIADAVREAFQPSARHDVDPSTAANVVDSEGVMASNATRKALI
Sbjct: 1   MADGSLSPLAAVNTASAAIADAVREAFQPSARHDVDPSTAANVVDSEGVMASNATRKALI 60

Query: 61  SFLDKHIQLLFASAFQQGSRRCYGVYARAVVTTRASDAAAAGXXXXXXXXXXXXXXXXXX 120
           SFLDKHIQLLFASAFQQGSRRCYGVYARAVVTTRASDAAAAG                  
Sbjct: 61  SFLDKHIQLLFASAFQQGSRRCYGVYARAVVTTRASDAAAAGRRTDVASAATAATAKRDV 120

Query: 121 XWMRDPKTGCWAPENRVDEVDAVDLRNLLLNYK 153
            WMRDPKTGCWAPENRVDEVDAVDLRNLLLNYK
Sbjct: 121 AWMRDPKTGCWAPENRVDEVDAVDLRNLLLNYK 153



>Os07g0478700 
          Length = 1182

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 47/61 (77%)

Query: 5  SLSPLAAVNTASAAIADAVREAFQPSARHDVDPSTAANVVDSEGVMASNATRKALISFLD 64
          S++P+ AV+ AS A+ADA+R  FQP ARH +DP+TAANV +S   ++S A  KALISF++
Sbjct: 9  SITPVTAVDAASTAVADAIRAVFQPDARHGIDPTTAANVTESAAAISSTAAWKALISFIE 68

Query: 65 K 65
          K
Sbjct: 69 K 69



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.127    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,046,082
Number of extensions: 116556
Number of successful extensions: 487
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)