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Os03g0400700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant protein 3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.26 (0.0592) R2 : 0.745
β1 : -1.42 (0.282) R2dD : 0.0429 R2D : 0.154
β2 : 1.65 (0.118) R2dC : 0.11 R2C : 0.0138
β3 : -5.03 (0.332) R2dE : 0.448 R2E : 0.271
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13.1 (0.786) R2dD*E : 0.317 R2D*E : -0.0288
γ1 : 0.243 (0.12) R2dN8 : 0.00481 R2N8 : -0.0928
σ : 0.84
deviance : 325.55
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C
peak time of C : 17.8
E
wheather : radiation
threshold : 10
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 8.81

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.52 0.848 7.26 -1.42 1.65 -5.03 -0.123 -13.1 0.243 17.8 10 4320 18 8.68
426.42 0.962 6.77 -1.62 1.52 -4.45 -0.382 -- 0.116 17.4 21.06 47520 17.9 8.42
325.55 0.84 7.26 -1.42 1.65 -5.03 -- -13.1 0.243 17.8 10 4320 18 8.81
417.27 0.951 6.8 -2.12 1.8 -4.42 -- -- 0.12 18.9 367.5 47520 17.9 9.13
454.44 0.993 7.24 -1.56 -- -4.89 -- -13 0.2 -- 10 4319 18 10.5
588.94 1.14 6.81 -4.6 1.41 -- -0.671 -- -0.0164 17.7 -- -- -- --
590.04 1.14 6.81 -4.6 1.41 -- -- -- -0.0191 17.7 -- -- -- --
535.58 1.08 6.76 -1.67 -- -4.23 -- -- 0.111 -- 16.1 47520 18 10.5
473.47 1.01 6.78 -- 1.72 -6.15 -- -- 0.202 18.4 250.4 47520 17.7 10.1
692.48 1.23 6.79 -4.64 -- -- -- -- -0.0524 -- -- -- -- --
1147 1.58 6.7 -- 1.48 -- -- -- 0.493 17.6 -- -- -- --
591.5 1.13 6.73 -- -- -5.84 -- -- 0.165 -- 10 47520 17.7 10.8
1260.7 1.66 6.68 -- -- -- -- -- 0.462 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 321.36 radiation 10.0 14400 < th dose dependent rect. 18 5
8 321.95 radiation 30.0 14400 < th dose dependent rect. 18 9
12 322.11 radiation 10.0 14400 < th dose dependent rect. 18 1
66 333.95 radiation 1.0 14400 > th dose independent rect. 18 12
76 337.85 precipitation 0.1 43200 < th dose independent rect. 17 2
77 337.85 precipitation 0.1 43200 < th dose dependent rect. 17 2
79 338.14 precipitation 0.1 43200 > th dose independent rect. 17 2
84 338.71 radiation 1.0 14400 < th dose independent rect. 18 12
86 338.90 radiation 10.0 14400 < th dose independent rect. 16 14
90 339.18 wind 1.0 43200 > th dose dependent rect. 8 2
96 339.78 radiation 1.0 14400 > th dose independent rect. 16 13
97 340.33 radiation 1.0 14400 < th dose independent rect. 16 9
98 340.33 radiation 1.0 14400 < th dose independent rect. 16 11
101 340.38 radiation 1.0 14400 < th dose independent rect. 16 7
103 340.42 radiation 1.0 14400 < th dose independent rect. 16 3
110 340.85 precipitation 0.1 43200 > th dose dependent rect. 16 3
111 340.94 radiation 1.0 14400 > th dose independent rect. 16 3
140 342.39 wind 9.0 43200 < th dose dependent rect. 8 2
145 342.45 radiation 1.0 14400 < th dose independent sin 14 NA
149 342.59 radiation 1.0 14400 > th dose independent rect. 18 1
161 342.69 radiation 1.0 14400 > th dose independent sin 13 NA
200 343.51 radiation 1.0 14400 < th dose independent rect. 9 21
222 343.97 radiation 1.0 14400 < th dose independent rect. 16 19
225 343.99 precipitation 0.1 43200 > th dose dependent rect. 17 5
229 344.05 radiation 1.0 4320 > th dose dependent rect. 17 13
231 344.13 radiation 1.0 14400 > th dose independent rect. 9 21
295 344.79 radiation 1.0 14400 < th dose independent rect. 9 16
304 344.84 radiation 1.0 14400 < th dose independent rect. 9 14
310 344.88 radiation 1.0 14400 < th dose independent rect. 9 10
437 346.11 radiation 1.0 14400 > th dose independent rect. 9 10
465 346.35 radiation 1.0 4320 > th dose dependent rect. 17 2
492 346.45 radiation 1.0 14400 < th dose independent rect. 21 22
493 346.45 radiation 1.0 14400 < th dose independent rect. 2 23
496 346.46 radiation 1.0 14400 < th dose independent no NA NA
497 346.46 radiation 1.0 14400 < th dose independent rect. 4 21
507 346.47 radiation 1.0 14400 < th dose independent rect. 24 23
508 346.48 radiation 1.0 14400 < th dose independent rect. 4 19
509 346.48 radiation 1.0 14400 < th dose independent rect. 24 19
515 346.49 radiation 1.0 14400 < th dose independent rect. 2 17
522 346.50 radiation 1.0 14400 < th dose independent rect. 4 15
638 347.19 radiation 1.0 14400 > th dose independent no NA NA
639 347.19 radiation 1.0 14400 > th dose independent rect. 4 15
688 347.24 temperature 15.0 4320 > th dose dependent rect. 16 1
691 347.31 wind 9.0 43200 > th dose dependent rect. 20 10
704 347.53 radiation 1.0 14400 < th dose independent rect. 21 9
738 347.76 radiation 1.0 14400 < th dose independent rect. 4 2
744 347.86 radiation 1.0 14400 > th dose independent rect. 4 2
794 348.79 radiation 1.0 14400 < th dose dependent rect. 16 7
797 348.84 radiation 1.0 14400 < th dose dependent rect. 16 3
817 349.34 radiation 1.0 14400 < th dose dependent rect. 16 13
823 349.46 radiation 30.0 14400 > th dose independent rect. 7 1
838 349.47 precipitation 0.1 43200 > th dose independent rect. 20 1
856 349.63 radiation 1.0 14400 < th dose dependent rect. 16 11
882 349.88 precipitation 0.1 43200 < th dose independent rect. 20 1
883 349.88 precipitation 0.1 43200 < th dose dependent rect. 20 1
937 351.05 wind 3.0 43200 < th dose independent rect. 8 1