BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0399400 Os03g0399400|J075099B03
         (408 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0399400  Cyclin-like F-box domain containing protein         682   0.0  
Os07g0617700  Cyclin-like F-box domain containing protein         474   e-134

>Os03g0399400 Cyclin-like F-box domain containing protein
          Length = 408

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/408 (85%), Positives = 347/408 (85%)

Query: 1   MASMAAXXXXXXXXXXXXGLGDLHDDVLERVLARLPPATFFRLRAVCRRWSAAAASPTFL 60
           MASMAA            GLGDLHDDVLERVLARLPPATFFRLRAVCRRWSAAAASPTFL
Sbjct: 1   MASMAARSSRKRRSPPPRGLGDLHDDVLERVLARLPPATFFRLRAVCRRWSAAAASPTFL 60

Query: 61  RACARVPSRDPWFLMLSGARPRPPLAFDAAGRSWIPCRXXXXXXXXXXXXXXXXXXXXXL 120
           RACARVPSRDPWFLMLSGARPRPPLAFDAAGRSWIPCR                     L
Sbjct: 61  RACARVPSRDPWFLMLSGARPRPPLAFDAAGRSWIPCRAAPGGSDGGADAAVPVASSGGL 120

Query: 121 VLYRAPGTGELLVANPLTGASRALPSPPGAHGGAPRLHAIAMYGSPYRVALFADELPDLS 180
           VLYRAPGTGELLVANPLTGASRALPSPPGAHGGAPRLHAIAMYGSPYRVALFADELPDLS
Sbjct: 121 VLYRAPGTGELLVANPLTGASRALPSPPGAHGGAPRLHAIAMYGSPYRVALFADELPDLS 180

Query: 181 MSVFDSSRGSWEGPVALSRRXXXXXXXXXXXXSQGGADDTVYFLSKSGDVVATNMQRSAS 240
           MSVFDSSRGSWEGPVALSRR            SQGGADDTVYFLSKSGDVVATNMQRSAS
Sbjct: 181 MSVFDSSRGSWEGPVALSRRPDAAALLPDDAPSQGGADDTVYFLSKSGDVVATNMQRSAS 240

Query: 241 KQYXXXXXXXXXXXXXXXXYFLSHSGTVVACDTARRTFAELPRILPVYFEYSIDVVACDG 300
           KQY                YFLSHSGTVVACDTARRTFAELPRILPVYFEYSIDVVACDG
Sbjct: 241 KQYSSVVVAASSDGGDAVAYFLSHSGTVVACDTARRTFAELPRILPVYFEYSIDVVACDG 300

Query: 301 AAYAVVLAEYLDTASLRVWGFAGGAWRQVAAMPPAMSHAFHGKKADINCVGHGGRLMVCV 360
           AAYAVVLAEYLDTASLRVWGFAGGAWRQVAAMPPAMSHAFHGKKADINCVGHGGRLMVCV
Sbjct: 301 AAYAVVLAEYLDTASLRVWGFAGGAWRQVAAMPPAMSHAFHGKKADINCVGHGGRLMVCV 360

Query: 361 SSGEANGCFMCDVGSNQWEELPKCVNGDGEVNDFLAAFSFEPRLEISV 408
           SSGEANGCFMCDVGSNQWEELPKCVNGDGEVNDFLAAFSFEPRLEISV
Sbjct: 361 SSGEANGCFMCDVGSNQWEELPKCVNGDGEVNDFLAAFSFEPRLEISV 408



>Os07g0617700 Cyclin-like F-box domain containing protein
          Length = 406

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/400 (64%), Positives = 287/400 (71%), Gaps = 22/400 (5%)

Query: 19  GLGDLHDDVLERVLARLPPATFFRLRAVCRRWSAAAASPTFLRACARVPSRDPWFLMLSG 78
           GLG++HDDVLERVLARLPPA++FRLR VCRRWS AA+SPTFL AC RVP+RDPWFLMLS 
Sbjct: 19  GLGEMHDDVLERVLARLPPASYFRLRGVCRRWSDAASSPTFLAACGRVPARDPWFLMLSE 78

Query: 79  A----RPRPPLAFDAAGRSWIPCRXXXXXXXXXXXXXXXXXXXXXLVLYRAPGTGELLVA 134
                R  P +AFDA    W  C                       VLYRAP TGEL VA
Sbjct: 79  GEGQERRLPAVAFDAGEGEWARC------GGAPGHVMPVVAASGGRVLYRAPDTGELTVA 132

Query: 135 NPLTGASRALPSPPGAHGGAPRLHAIAMYGS-PYRVALFADELPDLSMSVFDSSRGSWEG 193
           NPLTGASR LP+PP   G A  LHA+AMYGS PYRV L   +LPDLSM+VFDSS+ +W+ 
Sbjct: 133 NPLTGASRVLPAPP--PGAA--LHAVAMYGSSPYRVVLITGDLPDLSMTVFDSSKNAWDD 188

Query: 194 PVALSRRXXXXXXXXXXXXSQGGA-----DDTVYFLSKSGDVVATNMQRSASKQYXXXXX 248
            VALSR+              GG      D+TVYFLSKSGDV+ATNMQRSAS+QY     
Sbjct: 189 AVALSRKPDASSPERDAEGGVGGGGGGGDDETVYFLSKSGDVMATNMQRSASRQYSSAVT 248

Query: 249 XXXXXXXXXXXYFLSHSGTVVACDTARRTFAELPRILPVYFEYSIDVVACDGAAYAVVLA 308
                      YFLS+SG VVAC+ +RR FAELPRILPVYFEYSIDVVAC G AY VVL+
Sbjct: 249 CGDGGEAVA--YFLSNSGAVVACELSRRAFAELPRILPVYFEYSIDVVACGGRAYVVVLS 306

Query: 309 EYLDTASLRVWGFAGGAWRQVAAMPPAMSHAFHGKKADINCVGHGGRLMVCVSSGEANGC 368
           E L TASLR+W FAGGAWRQVAAMPPAMSHAFHGKKAD+NCVGHG R+MVCVSSGEANGC
Sbjct: 307 ELLGTASLRLWEFAGGAWRQVAAMPPAMSHAFHGKKADVNCVGHGDRVMVCVSSGEANGC 366

Query: 369 FMCDVGSNQWEELPKCVNGDGEVNDFLAAFSFEPRLEISV 408
           FMCDV +N+WEELP C    GE  DF+AAFSFEPR+E++V
Sbjct: 367 FMCDVPTNRWEELPPCAGAGGEPMDFVAAFSFEPRMEVTV 406



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,209,594
Number of extensions: 592592
Number of successful extensions: 2214
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2206
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 305
Effective length of database: 11,657,759
Effective search space: 3555616495
Effective search space used: 3555616495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)