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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0399400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.15 (0.0383) R2 : 0.505
β1 : -1.35 (0.143) R2dD : 0.0973 R2D : -0.051
β2 : 3.02 (0.172) R2dC : 1.23 R2C : -0.128
β3 : -3.06 (0.278) R2dE : 0.497 R2E : -0.917
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.792 (0.0814) R2dN8 : 0.136 R2N8 : 0.0508
σ : 0.71
deviance : 232.3
__
_____
C
peak time of C : 23.7
E
wheather : temperature
threshold : 37.24
memory length : 845
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.8
open length of G : 3.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.95 0.708 4.13 -0.886 2.27 -2.64 1.06 -3.6 -0.808 23.7 30.23 737 17 1.85
234.03 0.712 4.15 -1.24 2.88 -3.1 -0.63 -- -0.726 23.8 34.09 810 15 4.4
228.13 0.703 4.14 -0.97 2.27 -2.59 -- -2.19 -0.828 23.7 30.4 757 16.9 1.8
232.3 0.71 4.15 -1.35 3.02 -3.06 -- -- -0.792 23.7 37.24 845 14.8 3.6
374.73 0.902 4.08 -1.27 -- -1.86 -- -1.83 -0.928 -- 28.76 7303 16.4 1.65
296.44 0.807 4.11 -0.938 1.4 -- -0.269 -- -0.707 23.7 -- -- -- --
296.75 0.807 4.11 -0.928 1.4 -- -- -- -0.706 23.7 -- -- -- --
358.55 0.882 4.1 -1.49 -- -2.29 -- -- -0.761 -- 65.73 2965 12.6 4.22
274.28 0.771 4.14 -- 2.97 -2.75 -- -- -0.653 23.7 38.81 839 14.9 3.7
420.83 0.959 4.08 -0.888 -- -- -- -- -0.689 -- -- -- -- --
319.43 0.836 4.09 -- 1.39 -- -- -- -0.602 23.6 -- -- -- --
329.74 0.846 3.99 -- -- -2.11 -- -- -0.472 -- 114.7 3525 1.14 10.5
441.61 0.981 4.06 -- -- -- -- -- -0.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.45 temperature 30 720 < th dose dependent rect. 17 2
8 232.38 radiation 20 720 > th dose dependent rect. 16 1
24 233.45 temperature 20 720 > th dose dependent rect. 15 6
25 233.56 temperature 30 720 > th dose independent rect. 16 2
27 233.78 temperature 20 720 > th dose dependent rect. 16 4
32 234.97 temperature 20 720 > th dose dependent rect. 14 8
45 236.95 temperature 20 270 > th dose dependent rect. 17 10
51 237.62 temperature 10 720 > th dose dependent rect. 12 9
128 240.81 temperature 30 720 < th dose independent rect. 16 1
135 241.13 temperature 25 720 > th dose dependent sin 15 NA
137 241.28 temperature 30 720 < th dose independent rect. 15 3
142 241.44 temperature 25 720 < th dose independent rect. 17 3
162 241.67 temperature 30 270 < th dose dependent rect. 15 14
175 242.06 radiation 20 720 > th dose independent rect. 16 1
204 242.34 temperature 20 720 > th dose dependent sin 18 NA
208 242.49 temperature 10 720 > th dose dependent sin 18 NA
262 243.16 temperature 30 720 < th dose independent rect. 14 8
266 243.20 temperature 30 720 < th dose independent rect. 15 6
297 243.50 temperature 30 720 < th dose independent rect. 14 16
303 243.82 radiation 1 720 < th dose independent rect. 17 8
345 244.88 radiation 10 720 < th dose dependent rect. 16 9
403 245.50 temperature 30 720 > th dose independent sin 14 NA
404 245.51 temperature 30 720 < th dose dependent sin 19 NA
409 245.61 temperature 25 720 > th dose independent rect. 19 1
414 245.70 temperature 25 720 < th dose independent rect. 19 1
447 246.25 temperature 30 720 < th dose independent sin 14 NA
467 246.47 radiation 1 720 < th dose independent rect. 17 1
531 247.41 temperature 30 270 < th dose dependent sin 14 NA
549 247.71 humidity 70 720 > th dose independent rect. 16 16
563 247.98 radiation 1 720 > th dose independent rect. 17 2
576 248.03 humidity 70 720 < th dose independent rect. 16 17
631 248.85 humidity 70 720 < th dose independent rect. 16 3
681 249.45 humidity 70 720 > th dose independent rect. 16 9
702 249.73 atmosphere 1000 10 < th dose independent rect. 19 10
740 250.11 temperature 10 270 > th dose dependent sin 14 NA
782 250.50 atmosphere 1010 30 < th dose dependent rect. 18 11
795 250.70 humidity 70 720 > th dose independent rect. 16 7
802 250.79 humidity 70 720 > th dose independent sin 12 NA
860 251.30 radiation 1 720 < th dose dependent rect. 17 2
867 251.37 wind 1 14400 < th dose independent rect. 10 1
873 251.43 wind 1 14400 > th dose independent rect. 10 1
881 251.56 wind 1 14400 < th dose dependent rect. 10 1