BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0399400 Os03g0399400|J075099B03
         (408 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33160.1  | chr4:15994160-15995533 FORWARD LENGTH=458          288   4e-78
AT1G27340.1  | chr1:9495741-9497857 FORWARD LENGTH=468             65   9e-11
AT3G61590.1  | chr3:22792914-22794149 FORWARD LENGTH=412           59   7e-09

>AT4G33160.1 | chr4:15994160-15995533 FORWARD LENGTH=458
          Length = 457

 Score =  288 bits (736), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 154/401 (38%), Positives = 221/401 (55%), Gaps = 22/401 (5%)

Query: 20  LGDLHDDVLERVLARLPPATFFRLRAVCRRWSAAAASPTFLRACARVPSRDPWFLMLSGA 79
           + DL+DDVLERVL+ LP + FFR+ +VC+RW ++  S +F  AC+++P+RDPWF M+   
Sbjct: 67  MDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDND 126

Query: 80  RPRPPLAFDAAGRSWIPCRXXXXXXXXXXXXXXXXXXXXXLVLYRAPGTGELLVANPLTG 139
                  FD+   SW                         L+ YR   +G+ L+ NPLTG
Sbjct: 127 SNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGG-LLCYRCSISGDFLLRNPLTG 185

Query: 140 ASRALPSPPGAHGGAPRLHAIAMYG-----SPYRVALFADELPDLSMSVFDSSRGSWEGP 194
           +SR +PS    +     L A+AM       S Y +   + E+P+LS  +++S+  SW   
Sbjct: 186 SSRDIPSQDNNNNKP--LQAVAMTTTTVTPSSYTLVTISGEIPNLSFKIYESNADSWSKD 243

Query: 195 VALSRRXXXXXXXXXXXXSQGGADDTVYFLSKSGDVV--ATNMQRSASKQYXXXXXXXXX 252
             L               +  G   TVYFLSK G+VV  + N+QRS SKQY         
Sbjct: 244 QELESVKNNDSSLHDDYDTDSG---TVYFLSKQGNVVVASNNLQRSPSKQYSSVITVTDE 300

Query: 253 XXXXXXXYFLSHSGTVVACDTARRTFAELPRILPVYFEYSIDVVACDGAAYAVVLAEYLD 312
                  YFLS  GT+VACD  +R F ELP++LP + EYSID+V C+G  Y ++L+E+ +
Sbjct: 301 AEIV---YFLSSYGTIVACDLTKRCFTELPKLLPPFLEYSIDLVECEGTMYVILLSEFFE 357

Query: 313 TASLRVWGFAGG-AWRQVAAMPPAMSHAFHGKKADINCV-GHGGRLMVCVSSGEAN---G 367
           +ASLR+W       W QV  +PPA+SH  +GKK DINCV G G +++VC ++        
Sbjct: 358 SASLRIWRLDNNREWVQVGMLPPALSHELYGKKGDINCVGGAGNKILVCFNASPPEVYCR 417

Query: 368 CFMCDVGSNQWEELPKCVNGDGEVNDFLAAFSFEPRLEISV 408
            F+ D+ + +W ELPKC   DGE  DF++A SF+PR+E +V
Sbjct: 418 YFVYDLVAEEWNELPKCFK-DGEAVDFVSALSFQPRIEATV 457



>AT1G27340.1 | chr1:9495741-9497857 FORWARD LENGTH=468
          Length = 467

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 25  DDVLERVLARLPPATFFRLRAVCRRWSAAAASPTFLRACARVPSRDPWFLMLSGARPRPP 84
            D+ E V++RLP ATFF+ RAVCR+W+A   S +F R    +P   PWF  ++       
Sbjct: 122 QDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSG 181

Query: 85  LAFDAAGRSWIPCRXXXXXXXXXXXXXXXXXXXXXLVLYRAPGTGELLVANPLTGASRAL 144
             +D + + W                         LV +   G     V+NPLT + R L
Sbjct: 182 QVYDPSLKKW---HHPIIPALPKKSIVLPMASAGGLVCFLDIGHRNFYVSNPLTKSFREL 238

Query: 145 PS 146
           P+
Sbjct: 239 PA 240



>AT3G61590.1 | chr3:22792914-22794149 FORWARD LENGTH=412
          Length = 411

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 23  LHDDVLERVLARLPPATFFRLRAVCRRWSAAAASPTFL-RACARVPSRDPWFLMLSGARP 81
           L DD+LER+L+ LP A+ FR   VC+RW+   +S  FL        S+ PW+ M +    
Sbjct: 43  LPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTTDD 102

Query: 82  RPPLAFDAAGRSW----IPCRXXXXXXXXXXXXXXXXXXXXXLVLYRAPGTGELLVANPL 137
               A+D   R W    +PC                      +         ++ V+NP+
Sbjct: 103 PSGYAYDPIIRKWYSFDLPC--------IETSNWFVASSCGLVCFMDNDCRNKIYVSNPI 154

Query: 138 TGASRALPSPPG 149
           T   R L  PPG
Sbjct: 155 TKQWRTLIEPPG 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,968,194
Number of extensions: 295955
Number of successful extensions: 910
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 3
Length of query: 408
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,337,553
Effective search space: 2559628771
Effective search space used: 2559628771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)