Os07g0617700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0617700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 273.49 | 0.777 | 11 | 0.159 | 6.51 | 2.76 | 2.21 | -0.0307 | -0.638 | 6.71 | 23.33 | 96 | 10.6 | -- |
| 273.36 | 0.77 | 11 | 0.163 | 6.51 | 2.79 | 2.21 | -- | -0.641 | 6.71 | 23.27 | 107 | 10.8 | -- |
| 285.14 | 0.793 | 11 | 0.315 | 6.57 | 2.31 | -- | -1.39 | -0.616 | 6.68 | 23.33 | 96 | 10.6 | -- |
| 285.61 | 0.787 | 11 | 0.217 | 6.53 | 2.86 | -- | -- | -0.639 | 6.7 | 23.26 | 112 | 11 | -- |
| 474.77 | 1.01 | 11.1 | 0.189 | -- | 8.68 | -- | 0.384 | -0.252 | -- | 40.33 | 478 | 3.63 | -- |
| 334.96 | 0.858 | 11.1 | -0.23 | 6.34 | -- | 2.51 | -- | -0.894 | 6.48 | -- | -- | -- | -- |
| 350.63 | 0.877 | 11.1 | -0.197 | 6.35 | -- | -- | -- | -0.902 | 6.46 | -- | -- | -- | -- |
| 346.95 | 0.868 | 11.2 | -0.0471 | -- | 6.79 | -- | -- | -0.758 | -- | 107.1 | 474 | 3.51 | -- |
| 286.76 | 0.789 | 11 | -- | 6.53 | 2.78 | -- | -- | -0.665 | 6.69 | 23.23 | 108 | 10.9 | -- |
| 2447.31 | 2.31 | 11.2 | -0.0359 | -- | -- | -- | -- | -0.769 | -- | -- | -- | -- | -- |
| 351.65 | 0.877 | 11.1 | -- | 6.35 | -- | -- | -- | -0.88 | 6.46 | -- | -- | -- | -- |
| 345.92 | 0.866 | 11.2 | -- | -- | 6.75 | -- | -- | -0.806 | -- | 125 | 523 | 3.91 | -- |
| 2447.35 | 2.31 | 11.2 | -- | -- | -- | -- | -- | -0.765 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 272.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 5 | 273.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 7 | 273.61 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 12 |
| 42 | 276.28 | temperature | 25 | 90 | < th | dose dependent | sin | 16 | NA |
| 44 | 276.45 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 20 |
| 45 | 276.51 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 49 | 276.86 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 12 |
| 51 | 277.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 14 |
| 61 | 277.59 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 12 |
| 106 | 279.24 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 12 |
| 109 | 279.38 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 14 |
| 111 | 279.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 150 | 280.89 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 10 |
| 152 | 280.91 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 8 |
| 191 | 282.11 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 202 | 282.39 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 10 |
| 234 | 283.23 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 16 |
| 305 | 284.51 | temperature | 20 | 10 | < th | dose independent | sin | 14 | NA |
| 306 | 284.51 | radiation | 10 | 10 | > th | dose independent | sin | 22 | NA |
| 338 | 285.09 | radiation | 10 | 10 | > th | dose independent | rect. | 8 | 23 |
| 378 | 285.49 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 19 | 18 |
| 390 | 285.65 | radiation | 10 | 10 | > th | dose independent | rect. | 10 | 21 |
| 410 | 286.03 | temperature | 20 | 90 | < th | dose independent | sin | 16 | NA |
| 418 | 286.09 | radiation | 10 | 10 | > th | dose independent | rect. | 8 | 10 |
| 445 | 286.30 | radiation | 10 | 10 | > th | dose independent | rect. | 10 | 8 |
| 474 | 286.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 2 |
| 482 | 286.68 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 16 |
| 486 | 286.70 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 6 |
| 553 | 287.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 12 |
| 679 | 289.00 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 3 |
| 705 | 289.31 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 13 | 19 |
| 708 | 289.39 | radiation | 20 | 10 | < th | dose dependent | sin | 23 | NA |
| 715 | 289.45 | radiation | 20 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 725 | 289.56 | temperature | 20 | 10 | > th | dose independent | sin | 15 | NA |
| 738 | 289.70 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 21 | 16 |
| 755 | 289.89 | temperature | 20 | 90 | > th | dose independent | sin | 16 | NA |
| 783 | 290.25 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 6 |
| 807 | 290.36 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 866 | 290.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 892 | 291.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 12 |
| 898 | 291.06 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 10 |
| 904 | 291.09 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 935 | 291.31 | radiation | 10 | 10 | > th | dose independent | rect. | 10 | 4 |
| 940 | 291.35 | radiation | 10 | 10 | < th | dose independent | sin | 22 | NA |
| 947 | 291.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 974 | 291.61 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 996 | 291.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 12 |