BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0387900 Os03g0387900|AK100539
         (572 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0387900  Conserved hypothetical protein                     1113   0.0  
AK063604                                                          171   2e-42
Os01g0498200  Conserved hypothetical protein                       75   1e-13

>Os03g0387900 Conserved hypothetical protein
          Length = 572

 Score = 1113 bits (2878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/572 (93%), Positives = 536/572 (93%)

Query: 1   MPDWRVGEFEGKLKDGFARSNNSEHENGAGTVSISSKKSKHRVDSEKKPHVDISGVIDSD 60
           MPDWRVGEFEGKLKDGFARSNNSEHENGAGTVSISSKKSKHRVDSEKKPHVDISGVIDSD
Sbjct: 1   MPDWRVGEFEGKLKDGFARSNNSEHENGAGTVSISSKKSKHRVDSEKKPHVDISGVIDSD 60

Query: 61  SQKCNSEQIHSANGIVSRDVNHDHIENCKVESNDFPLNTISETRYPTDNWNSSQFALSND 120
           SQKCNSEQIHSANGIVSRDVNHDHIENCKVESNDFPLNTISETRYPTDNWNSSQFALSND
Sbjct: 61  SQKCNSEQIHSANGIVSRDVNHDHIENCKVESNDFPLNTISETRYPTDNWNSSQFALSND 120

Query: 121 GSPVLNNQSTPQTGHGYGDNDLTYIDWPAIDNFEDVDNLFRRCDSTYGQQQLPNTDELSW 180
           GSPVLNNQSTPQTGHGYGDNDLTYIDWPAIDNFEDVDNLFRRCDSTYGQQQLPNTDELSW
Sbjct: 121 GSPVLNNQSTPQTGHGYGDNDLTYIDWPAIDNFEDVDNLFRRCDSTYGQQQLPNTDELSW 180

Query: 181 IPSSDAMYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSY 240
           IPSSDAMYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSY
Sbjct: 181 IPSSDAMYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSY 240

Query: 241 LFNEQKPEDVYGEQAYQRDAMELLSSDQICTGQENLDMIGNRYSSENAMEQPEDQKFSIA 300
           LFNEQKPEDVYGEQAYQRDAMELLSSDQICTGQENLDMIGNRYSSENAMEQPEDQKFSIA
Sbjct: 241 LFNEQKPEDVYGEQAYQRDAMELLSSDQICTGQENLDMIGNRYSSENAMEQPEDQKFSIA 300

Query: 301 XXXXXXXXXXXXXXXXHLDSTSPSNITSESYPERNCQIIPSGASFAERNLKVQKKVASSA 360
                           HLDSTSPSNITSESYPERNCQIIPSGASFAERNLKVQKKVASSA
Sbjct: 301 SGSQLSSSQNLLNQKNHLDSTSPSNITSESYPERNCQIIPSGASFAERNLKVQKKVASSA 360

Query: 361 SGQLISDNVTGHPGHQTLTRRASYPCENHEIGKRSLGKRGLGHSDVAMGTSMXXXXXXXX 420
           SGQLISDNVTGHPGHQTLTRRASYPCENHEIGKRSLGKRGLGHSDVAMGTSM        
Sbjct: 361 SGQLISDNVTGHPGHQTLTRRASYPCENHEIGKRSLGKRGLGHSDVAMGTSMVVDGSFVS 420

Query: 421 XXXXXXXXXXXXFRQLQDAVSQLDVKTKMCIRDGLYRLARSAQNRQVFPNTMNNNGDSHN 480
                       FRQLQDAVSQLDVKTKMCIRDGLYRLARSAQNRQVFPNTMNNNGDSHN
Sbjct: 421 SISSDNSVEENSFRQLQDAVSQLDVKTKMCIRDGLYRLARSAQNRQVFPNTMNNNGDSHN 480

Query: 481 VKDMQNAETSGKFVDPGSIETQTNPIDRSIALLLFHQPSEHVTGAVDEAASLKSHNDNHQ 540
           VKDMQNAETSGKFVDPGSIETQTNPIDRSIALLLFHQPSEHVTGAVDEAASLKSHNDNHQ
Sbjct: 481 VKDMQNAETSGKFVDPGSIETQTNPIDRSIALLLFHQPSEHVTGAVDEAASLKSHNDNHQ 540

Query: 541 AAAKNQRVMHASSVHSPRGQGDPMDAKSCRNN 572
           AAAKNQRVMHASSVHSPRGQGDPMDAKSCRNN
Sbjct: 541 AAAKNQRVMHASSVHSPRGQGDPMDAKSCRNN 572



>AK063604 
          Length = 85

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 187 MYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSYLFNEQK 246
           MYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSYLFNEQK
Sbjct: 1   MYSSDVAMQPGFESSYSDYGILDDLSAFNCTEDKSLTTADPSSAVCDEQFDDSYLFNEQK 60

Query: 247 PEDVYGEQAYQRDAMELLSSDQ 268
           PEDVYGEQAYQRDAMELLSSDQ
Sbjct: 61  PEDVYGEQAYQRDAMELLSSDQ 82



>Os01g0498200 Conserved hypothetical protein
          Length = 282

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 3/97 (3%)

Query: 433 FRQLQDAVSQLDVKTKMCIRDGLYRLARSAQNRQVFPNTMNNNGDSHNVKDMQNAETSGK 492
           + QLQDA+++LD +T+ CIRD L RLA S   RQ+   +  ++ +  N  D + +E + K
Sbjct: 148 YYQLQDALAKLDTRTRRCIRDSLLRLAHSVSERQI--TSDRSSANKSNKDDDEVSEDTSK 205

Query: 493 FVDPGS-IETQTNPIDRSIALLLFHQPSEHVTGAVDE 528
              P S  ET TNPIDR +A LLFH+P   V+    E
Sbjct: 206 RRSPASEAETNTNPIDRIVAHLLFHKPCSKVSTPAKE 242



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.127    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,820,768
Number of extensions: 775531
Number of successful extensions: 1566
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 3
Length of query: 572
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 466
Effective length of database: 11,501,117
Effective search space: 5359520522
Effective search space used: 5359520522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)