FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0498200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0341) R2 : 0.947
β1 : -0.773 (0.125) R2dD : 0.00464 R2D : 0.0107
β2 : 2.44 (0.0882) R2dC : 0.0914 R2C : 0.144
β3 : -8.05 (0.0986) R2dE : 0.79 R2E : 0.851
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0464 (0.0728) R2dN8 : 8.56e-05 R2N8 : -6.6e-05
σ : 0.636
deviance : 186.74
__
_____
C
peak time of C : 7.39
E
wheather : temperature
threshold : 11.98
memory length : 253
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 7.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.83 0.644 11.9 -0.829 2.56 -8.23 0.874 -0.256 -0.09 6.88 10.77 258 19.1 7.97
186.8 0.637 11.9 -0.775 2.57 -8.24 0.995 -- -0.0946 6.94 11.07 256 19.1 7.93
188.49 0.639 11.9 -0.697 2.53 -8.21 -- 0.0528 -0.0593 6.99 11.3 253 19.1 7.95
186.74 0.636 11.9 -0.773 2.44 -8.05 -- -- -0.0464 7.39 11.98 253 19.1 7.9
349.54 0.871 11.9 -0.727 -- -8.18 -- 0.994 0.0544 -- 11.28 214 18.7 8.1
827.5 1.35 11.9 -1.32 6.44 -- 1.81 -- -0.336 11.7 -- -- -- --
841.65 1.36 11.9 -1.25 6.44 -- -- -- -0.328 11.7 -- -- -- --
343.57 0.863 11.9 -0.891 -- -8.22 -- -- -0.00393 -- 11.21 219 18.7 8.07
202.33 0.662 11.8 -- 2.51 -7.99 -- -- -0.00917 7.46 11.91 251 19.2 7.86
3445.89 2.74 12 -1.43 -- -- -- -- -0.405 -- -- -- -- --
882.73 1.39 11.8 -- 6.45 -- -- -- -0.189 11.7 -- -- -- --
357.82 0.881 11.9 -- -- -8.43 -- -- 0.165 -- 11.89 235 18.5 8.07
3500.01 2.76 12 -- -- -- -- -- -0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.16 temperature 10.0 270 > th dose dependent rect. 19 8
11 261.38 temperature 15.0 10 > th dose dependent rect. 21 8
16 277.05 temperature 20.0 90 > th dose independent rect. 21 7
27 309.20 temperature 20.0 10 > th dose independent rect. 21 8
62 345.07 temperature 20.0 90 > th dose independent rect. 9 19
109 388.50 temperature 20.0 10 > th dose independent rect. 9 20
141 407.98 atmosphere 1010.0 90 < th dose independent rect. 21 7
152 415.92 precipitation 0.1 270 < th dose independent rect. 3 4
153 415.92 precipitation 0.1 270 < th dose dependent rect. 3 4
155 417.62 atmosphere 1015.0 270 < th dose independent rect. 7 20
156 420.00 radiation 20.0 270 < th dose independent rect. 3 4
157 420.21 wind 7.0 270 < th dose independent rect. 3 4
159 420.55 humidity 70.0 270 > th dose independent rect. 3 4
160 420.81 wind 9.0 270 < th dose dependent rect. 3 4
161 420.89 atmosphere 1010.0 270 < th dose independent rect. 19 8
165 421.12 temperature 10.0 270 > th dose independent rect. 3 4
167 421.12 temperature 30.0 270 < th dose independent rect. 3 4
168 421.12 humidity 50.0 270 > th dose independent rect. 3 4
170 421.12 atmosphere 995.0 270 > th dose independent rect. 3 4
171 421.12 atmosphere 1015.0 270 < th dose independent rect. 3 4
176 422.18 radiation 40.0 270 < th dose dependent rect. 3 4
178 422.73 temperature 10.0 90 > th dose dependent rect. 9 19
183 424.61 wind 9.0 270 < th dose independent rect. 7 20
188 425.49 atmosphere 1015.0 270 < th dose independent rect. 8 18
202 428.82 humidity 50.0 270 > th dose dependent rect. 3 4
208 430.56 atmosphere 1010.0 10 < th dose independent rect. 21 8
210 430.90 temperature 10.0 270 > th dose dependent rect. 3 4
215 433.46 precipitation 0.1 270 < th dose independent rect. 7 20
216 433.46 precipitation 0.1 270 < th dose dependent rect. 7 20
217 433.85 precipitation 0.1 270 < th dose independent rect. 2 6
218 433.85 precipitation 0.1 270 < th dose dependent rect. 2 6
230 435.71 temperature 10.0 270 > th dose dependent rect. 4 2
237 437.68 wind 7.0 270 < th dose independent rect. 2 6
240 439.15 radiation 40.0 270 < th dose independent rect. 2 6
242 439.19 temperature 10.0 270 > th dose independent rect. 2 6
244 439.19 temperature 30.0 270 < th dose independent rect. 2 6
245 439.19 humidity 50.0 270 > th dose independent rect. 2 6
247 439.19 atmosphere 995.0 270 > th dose independent rect. 2 6
248 439.19 atmosphere 1015.0 270 < th dose independent rect. 2 6
250 439.30 temperature 10.0 10 > th dose dependent rect. 9 20
275 441.34 precipitation 0.1 270 < th dose independent rect. 3 16
276 441.34 precipitation 0.1 270 < th dose dependent rect. 3 16
277 441.98 wind 9.0 270 < th dose independent rect. 8 18
311 446.59 temperature 10.0 270 > th dose independent rect. 7 8
312 446.59 atmosphere 1015.0 270 < th dose independent rect. 7 8
313 446.59 temperature 10.0 270 > th dose independent rect. 15 16
319 447.41 wind 9.0 270 < th dose dependent rect. 4 2
321 447.62 precipitation 0.1 270 < th dose independent rect. 7 8
322 447.62 precipitation 0.1 270 < th dose dependent rect. 7 8
323 447.63 radiation 40.0 270 < th dose independent rect. 15 16
324 447.93 wind 9.0 270 < th dose independent rect. 15 16
325 447.96 wind 9.0 270 < th dose independent rect. 7 8
326 448.04 humidity 60.0 270 > th dose independent rect. 19 8
327 448.17 atmosphere 995.0 270 > th dose independent rect. 7 8
328 448.17 radiation 40.0 270 < th dose dependent rect. 2 6
330 448.39 precipitation 0.1 270 < th dose independent rect. 15 16
331 448.39 precipitation 0.1 270 < th dose dependent rect. 15 16
333 448.64 radiation 1.0 270 < th dose dependent rect. 19 8
335 448.66 temperature 30.0 270 < th dose independent rect. 19 8
337 448.66 atmosphere 995.0 270 > th dose independent rect. 19 8
338 448.66 radiation 1.0 270 < th dose independent rect. 19 8
343 448.66 temperature 10.0 270 > th dose independent rect. 3 16
344 448.66 atmosphere 1015.0 270 < th dose independent rect. 3 16
354 449.16 wind 9.0 270 < th dose independent rect. 19 8
371 449.56 precipitation 0.1 270 < th dose independent rect. 8 18
372 449.56 precipitation 0.1 270 < th dose dependent rect. 8 18
386 451.87 precipitation 0.1 270 < th dose independent rect. 19 8
387 451.87 precipitation 0.1 270 < th dose dependent rect. 19 8
408 452.96 wind 9.0 270 < th dose independent rect. 3 16
415 453.75 wind 9.0 270 < th dose dependent rect. 2 6
439 457.40 humidity 50.0 270 > th dose dependent rect. 2 6
454 459.53 atmosphere 995.0 270 > th dose independent rect. 7 20
476 463.67 atmosphere 1015.0 10 < th dose independent rect. 9 20
512 466.67 temperature 10.0 270 > th dose dependent rect. 2 6
584 470.76 atmosphere 995.0 270 > th dose independent rect. 15 16
596 471.44 radiation 1.0 10 < th dose dependent rect. 21 8
618 472.34 wind 9.0 10 < th dose dependent rect. 5 4
623 473.14 atmosphere 995.0 270 > th dose independent rect. 8 18
624 473.20 wind 9.0 10 < th dose independent rect. 21 8
633 473.67 wind 1.0 270 > th dose independent rect. 7 8
639 473.80 temperature 30.0 10 < th dose independent rect. 21 8
640 473.80 humidity 50.0 10 > th dose independent rect. 21 8
643 473.80 atmosphere 995.0 10 > th dose independent rect. 21 8
644 473.80 radiation 1.0 10 < th dose independent rect. 21 8
649 473.80 temperature 10.0 10 > th dose independent rect. 5 16
651 473.80 atmosphere 1015.0 10 < th dose independent rect. 5 16
655 474.04 radiation 1.0 10 < th dose dependent sin 9 NA
662 474.54 humidity 50.0 270 > th dose independent rect. 7 8
664 474.63 wind 9.0 90 < th dose dependent rect. 20 8
670 474.93 radiation 1.0 270 > th dose independent rect. 7 8
671 475.21 precipitation 0.1 10 < th dose independent rect. 5 16
672 475.21 precipitation 0.1 10 < th dose dependent rect. 5 16
684 475.75 temperature 10.0 10 > th dose dependent rect. 5 4
727 476.34 wind 9.0 10 < th dose independent rect. 5 16
729 476.44 wind 9.0 10 < th dose dependent rect. 20 9
742 477.76 radiation 40.0 10 < th dose independent rect. 5 4
746 477.90 precipitation 0.1 10 < th dose independent rect. 5 4
747 477.90 precipitation 0.1 10 < th dose dependent rect. 5 4
753 478.32 wind 7.0 10 < th dose independent rect. 5 4
755 478.32 temperature 10.0 10 > th dose independent rect. 5 4
757 478.32 temperature 30.0 10 < th dose independent rect. 5 4
758 478.32 humidity 50.0 10 > th dose independent rect. 5 4
760 478.32 atmosphere 995.0 10 > th dose independent rect. 5 4
761 478.32 atmosphere 1015.0 10 < th dose independent rect. 5 4
794 480.03 humidity 50.0 90 > th dose dependent rect. 21 7
806 481.09 humidity 50.0 10 > th dose dependent rect. 20 9
826 482.68 wind 9.0 10 < th dose independent rect. 9 20
893 484.77 radiation 1.0 10 > th dose independent sin 10 NA
897 485.05 radiation 1.0 10 < th dose dependent rect. 21 15
946 487.84 atmosphere 1015.0 270 < th dose independent rect. 21 16
964 489.63 atmosphere 1015.0 90 < th dose dependent rect. 21 7
978 489.95 atmosphere 995.0 270 > th dose independent rect. 3 16
993 490.34 atmosphere 1015.0 10 < th dose dependent rect. 20 9