BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0498200 Os01g0498200|AK062264
         (282 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0498200  Conserved hypothetical protein                      529   e-151
Os03g0387900  Conserved hypothetical protein                       82   5e-16

>Os01g0498200 Conserved hypothetical protein
          Length = 282

 Score =  529 bits (1363), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/282 (93%), Positives = 263/282 (93%)

Query: 1   YQFPGIPLMSNVQAESHQTKPATTNYRTSIDSPKQSSSAEKSQDIPSRPLMMTPQEKIEK 60
           YQFPGIPLMSNVQAESHQTKPATTNYRTSIDSPKQSSSAEKSQDIPSRPLMMTPQEKIEK
Sbjct: 1   YQFPGIPLMSNVQAESHQTKPATTNYRTSIDSPKQSSSAEKSQDIPSRPLMMTPQEKIEK 60

Query: 61  XXXXXXXXXXXXXXXXXXXFGQDGSGSDTMVPQAYSPKSKNPDSLGSSVVIDDNANKVFS 120
                              FGQDGSGSDTMVPQAYSPKSKNPDSLGSSVVIDDNANKVFS
Sbjct: 61  LRRRQQMQALIAIQQQQQQFGQDGSGSDTMVPQAYSPKSKNPDSLGSSVVIDDNANKVFS 120

Query: 121 LELIPTGHEEIQKSSGIPDDPFIEEKIYYQLQDALAKLDTRTRRCIRDSLLRLAHSVSER 180
           LELIPTGHEEIQKSSGIPDDPFIEEKIYYQLQDALAKLDTRTRRCIRDSLLRLAHSVSER
Sbjct: 121 LELIPTGHEEIQKSSGIPDDPFIEEKIYYQLQDALAKLDTRTRRCIRDSLLRLAHSVSER 180

Query: 181 QITSDRSSANKSNKDDDEVSEDTSKRRSPASEAETNTNPIDRIVAHLLFHKPCSKVSTPA 240
           QITSDRSSANKSNKDDDEVSEDTSKRRSPASEAETNTNPIDRIVAHLLFHKPCSKVSTPA
Sbjct: 181 QITSDRSSANKSNKDDDEVSEDTSKRRSPASEAETNTNPIDRIVAHLLFHKPCSKVSTPA 240

Query: 241 KEEIKSSTPLPTEPDSKIPTDAPGGPSENHQNGQEMTLQPSL 282
           KEEIKSSTPLPTEPDSKIPTDAPGGPSENHQNGQEMTLQPSL
Sbjct: 241 KEEIKSSTPLPTEPDSKIPTDAPGGPSENHQNGQEMTLQPSL 282



>Os03g0387900 Conserved hypothetical protein
          Length = 572

 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 135 SGIPDDPFIEEKIYYQLQDALAKLDTRTRRCIRDSLLRLAHSVSERQI--TSDRSSANKS 192
           S I  D  +EE  + QLQDA+++LD +T+ CIRD L RLA S   RQ+   +  ++ +  
Sbjct: 420 SSISSDNSVEENSFRQLQDAVSQLDVKTKMCIRDGLYRLARSAQNRQVFPNTMNNNGDSH 479

Query: 193 NKDDDEVSEDTSKRRSPASEAETNTNPIDRIVAHLLFHKPCSKVSTPAKE 242
           N  D + +E + K   P S  ET TNPIDR +A LLFH+P   V+    E
Sbjct: 480 NVKDMQNAETSGKFVDPGS-IETQTNPIDRSIALLLFHQPSEHVTGAVDE 528



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.124    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,493,773
Number of extensions: 392508
Number of successful extensions: 1305
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 155 (64.3 bits)