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Os03g0387900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0336) R2 : 0.96
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.7 (0.0951) R2dC : 0.286 R2C : 0.602
β3 : -6.41 (0.115) R2dE : 0.36 R2E : 0.668
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.413 (0.0708) R2dN8 : 0.00386 R2N8 : -0.00379
σ : 0.629
deviance : 182.65
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_____
C
peak time of C : 9.57
E
wheather : temperature
threshold : 15.44
memory length : 122
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.5
open length of G : 7.29

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.37 0.645 11.2 -0.0743 4.71 -6.26 0.688 1.25 0.32 9.5 14.3 109 20.8 7.17
187.2 0.637 11.2 -0.042 4.7 -6.26 0.0298 -- 0.34 9.48 14.49 114 20.7 7.2
185.32 0.634 11.2 0.0785 4.78 -6.15 -- 1.21 0.399 9.65 15.17 111 20.7 7.23
182.82 0.63 11.2 -0.0863 4.74 -6.37 -- -- 0.388 9.56 15.38 117 20.6 7.28
729.68 1.26 11.3 1.05 -- -9.92 -- 3.18 0.587 -- 12.93 331 18.2 6.46
823 1.34 11.2 -0.569 7.76 -- 1.3 -- 0.0488 11.2 -- -- -- --
830.28 1.35 11.2 -0.516 7.75 -- -- -- 0.0535 11.2 -- -- -- --
419.64 0.954 11.4 -0.287 -- -9.27 -- -- 0.187 -- 4.295 343 16.7 8.53
182.65 0.629 11.2 -- 4.7 -6.41 -- -- 0.413 9.57 15.44 122 20.5 7.29
4587.03 3.16 11.4 -0.705 -- -- -- -- -0.0158 -- -- -- -- --
837.31 1.35 11.2 -- 7.76 -- -- -- 0.111 11.2 -- -- -- --
407.52 0.94 11.3 -- -- -9.4 -- -- 0.188 -- 5.637 339 16.7 8.83
4600.15 3.17 11.4 -- -- -- -- -- 0.0625 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.96 temperature 15.0 90 > th dose dependent rect. 21 7
2 206.47 temperature 15.0 270 > th dose dependent rect. 19 8
12 262.41 temperature 15.0 10 > th dose dependent rect. 21 8
19 282.73 temperature 20.0 90 > th dose independent rect. 21 7
42 324.20 temperature 20.0 10 > th dose independent rect. 21 8
46 329.25 temperature 20.0 90 > th dose independent rect. 9 19
87 371.14 temperature 20.0 10 > th dose independent rect. 9 20
134 401.93 temperature 10.0 90 > th dose dependent rect. 9 19
145 405.07 atmosphere 1010.0 90 < th dose independent rect. 21 7
174 422.12 temperature 10.0 10 > th dose dependent rect. 8 21
187 428.23 atmosphere 1015.0 270 < th dose independent rect. 7 19
189 428.96 atmosphere 1015.0 270 < th dose independent rect. 6 21
199 431.55 precipitation 0.1 270 < th dose independent rect. 3 3
200 431.55 precipitation 0.1 270 < th dose dependent rect. 3 3
204 433.62 wind 7.0 270 < th dose independent rect. 3 3
208 434.91 temperature 10.0 270 > th dose independent rect. 3 3
210 434.91 temperature 30.0 270 < th dose independent rect. 3 3
211 434.91 humidity 50.0 270 > th dose independent rect. 3 3
214 434.91 atmosphere 995.0 270 > th dose independent rect. 3 3
215 434.91 atmosphere 1015.0 270 < th dose independent rect. 3 3
216 434.91 radiation 20.0 270 < th dose independent rect. 3 3
224 435.89 radiation 30.0 270 < th dose dependent rect. 3 4
237 438.94 precipitation 0.1 270 < th dose independent rect. 6 21
238 438.94 precipitation 0.1 270 < th dose dependent rect. 6 21
240 439.76 wind 9.0 270 < th dose independent rect. 6 21
241 439.78 atmosphere 1015.0 90 < th dose independent rect. 9 19
253 442.28 atmosphere 1010.0 10 < th dose independent rect. 21 8
274 446.16 wind 9.0 270 < th dose dependent rect. 3 3
275 446.26 humidity 50.0 270 > th dose dependent rect. 3 3
279 447.22 temperature 10.0 270 > th dose dependent rect. 4 2
401 462.09 wind 9.0 90 < th dose independent rect. 9 19
411 464.22 atmosphere 1015.0 10 < th dose independent rect. 9 20
444 470.31 precipitation 0.1 90 < th dose independent rect. 9 19
445 470.31 precipitation 0.1 90 < th dose dependent rect. 9 19
469 471.66 atmosphere 1015.0 90 < th dose dependent rect. 21 7
495 473.70 atmosphere 995.0 270 > th dose dependent rect. 3 3
505 475.39 wind 9.0 10 < th dose dependent rect. 5 4
513 476.22 radiation 40.0 10 < th dose dependent rect. 5 4
522 477.50 temperature 30.0 270 < th dose dependent rect. 15 16
535 480.34 atmosphere 995.0 90 > th dose independent rect. 9 19
538 480.80 humidity 50.0 10 > th dose dependent rect. 5 4
542 481.44 atmosphere 1015.0 10 < th dose dependent rect. 21 8
548 482.03 radiation 40.0 10 < th dose independent rect. 5 4
557 483.64 radiation 1.0 10 < th dose dependent sin 10 NA
558 483.68 precipitation 0.1 10 < th dose independent rect. 5 4
559 483.68 precipitation 0.1 10 < th dose dependent rect. 5 4
560 483.72 wind 5.0 10 < th dose independent rect. 5 4
563 483.76 temperature 10.0 10 > th dose independent rect. 5 4
565 483.76 temperature 30.0 10 < th dose independent rect. 5 4
566 483.76 humidity 50.0 10 > th dose independent rect. 5 4
568 483.76 atmosphere 995.0 10 > th dose independent rect. 5 4
569 483.76 atmosphere 1015.0 10 < th dose independent rect. 5 4
576 484.25 wind 9.0 90 < th dose dependent rect. 20 8
584 485.20 wind 9.0 90 < th dose independent rect. 21 7
585 485.21 radiation 1.0 90 < th dose dependent rect. 21 7
587 485.23 temperature 30.0 90 < th dose independent rect. 21 7
588 485.23 humidity 50.0 90 > th dose independent rect. 21 7
591 485.23 atmosphere 995.0 90 > th dose independent rect. 21 7
592 485.23 radiation 1.0 90 < th dose independent rect. 21 7
597 485.23 temperature 10.0 90 > th dose independent rect. 4 17
598 485.23 atmosphere 1015.0 90 < th dose independent rect. 4 17
606 485.52 precipitation 0.1 90 < th dose independent rect. 21 7
607 485.52 precipitation 0.1 90 < th dose dependent rect. 21 7
625 487.31 atmosphere 995.0 270 > th dose independent rect. 7 20
646 488.13 precipitation 0.1 90 < th dose independent rect. 4 17
647 488.13 precipitation 0.1 90 < th dose dependent rect. 4 17
648 488.31 wind 9.0 90 < th dose independent rect. 4 17
653 488.57 precipitation 0.1 10 < th dose independent rect. 9 20
654 488.57 precipitation 0.1 10 < th dose dependent rect. 9 20
658 488.83 wind 9.0 10 < th dose independent rect. 9 20
672 489.83 temperature 10.0 10 > th dose dependent rect. 5 3
713 493.54 radiation 40.0 270 < th dose independent rect. 15 16
714 493.70 wind 9.0 10 < th dose dependent rect. 21 8
719 494.20 precipitation 0.1 270 < th dose independent rect. 7 8
720 494.20 precipitation 0.1 270 < th dose dependent rect. 7 8
721 494.24 temperature 10.0 270 > th dose independent rect. 7 8
722 494.24 atmosphere 1015.0 270 < th dose independent rect. 7 8
724 494.24 temperature 10.0 270 > th dose independent rect. 15 16
730 494.57 wind 9.0 270 < th dose independent rect. 7 8
738 495.43 radiation 1.0 10 > th dose independent sin 10 NA
762 495.90 wind 9.0 270 < th dose independent rect. 15 16
765 496.16 atmosphere 995.0 270 > th dose independent rect. 7 8
813 497.16 radiation 1.0 10 < th dose dependent rect. 21 8
833 498.33 wind 1.0 270 > th dose independent rect. 3 3
872 498.79 atmosphere 995.0 10 > th dose independent rect. 9 20
882 499.44 wind 9.0 10 < th dose independent rect. 21 8
896 500.02 temperature 30.0 10 < th dose independent rect. 21 8
897 500.02 humidity 50.0 10 > th dose independent rect. 21 8
900 500.02 atmosphere 995.0 10 > th dose independent rect. 21 8
901 500.02 radiation 1.0 10 < th dose independent rect. 21 8
906 500.02 temperature 10.0 10 > th dose independent rect. 5 16
908 500.02 atmosphere 1015.0 10 < th dose independent rect. 5 16
918 500.54 temperature 10.0 270 > th dose dependent rect. 21 15
949 501.68 precipitation 0.1 10 < th dose independent rect. 5 16
950 501.68 precipitation 0.1 10 < th dose dependent rect. 5 16
956 502.19 wind 9.0 10 < th dose independent rect. 5 16
968 502.91 humidity 50.0 90 > th dose dependent rect. 21 7
982 503.46 atmosphere 995.0 270 > th dose independent rect. 15 16
983 503.46 precipitation 0.1 270 < th dose independent rect. 15 16
984 503.46 precipitation 0.1 270 < th dose dependent rect. 15 16