BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0374400 Os03g0374400|AK069719
         (346 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0374400  Conserved hypothetical protein                      682   0.0  
Os07g0634000  Conserved hypothetical protein                      323   2e-88
Os07g0467600  Similar to Plus agglutinin                          218   7e-57

>Os03g0374400 Conserved hypothetical protein
          Length = 346

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/346 (96%), Positives = 334/346 (96%)

Query: 1   MARVLPLSIEAGEMAMPRREEVVTDMPSSSAVASGNGIEQPEQNTKDDEYERLVRPAHSV 60
           MARVLPLSIEAGEMAMPRREEVVTDMPSSSAVASGNGIEQPEQNTKDDEYERLVRPAHSV
Sbjct: 1   MARVLPLSIEAGEMAMPRREEVVTDMPSSSAVASGNGIEQPEQNTKDDEYERLVRPAHSV 60

Query: 61  IADDNTVVLPEEPTSRSIWWMKVLLGCFLLILVSYVFVKWGVPFAFEKVLLPIMQWEASA 120
           IADDNTVVLPEEPTSRSIWWMKVLLGCFLLILVSYVFVKWGVPFAFEKVLLPIMQWEASA
Sbjct: 61  IADDNTVVLPEEPTSRSIWWMKVLLGCFLLILVSYVFVKWGVPFAFEKVLLPIMQWEASA 120

Query: 121 FGRPXXXXXXXXXXXXFPVTLVPSGPSMWLAGMIFGYGWGFLIIMVGTTIGMVVPYWIGS 180
           FGRP            FPVTLVPSGPSMWLAGMIFGYGWGFLIIMVGTTIGMVVPYWIGS
Sbjct: 121 FGRPVLAVVLVASLALFPVTLVPSGPSMWLAGMIFGYGWGFLIIMVGTTIGMVVPYWIGS 180

Query: 181 LFRERLHAWLKRWPQQIALIKLAGEGNWFQQFRVVALFRISPFPYTIFNYAVTVTEIKFN 240
           LFRERLHAWLKRWPQQIALIKLAGEGNWFQQFRVVALFRISPFPYTIFNYAVTVTEIKFN
Sbjct: 181 LFRERLHAWLKRWPQQIALIKLAGEGNWFQQFRVVALFRISPFPYTIFNYAVTVTEIKFN 240

Query: 241 PYLCGSIAGMIPEAFIYIYSGRLIRTLADMKYGNYKMTPVEITYNAISFVIAVVLTVAFT 300
           PYLCGSIAGMIPEAFIYIYSGRLIRTLADMKYGNYKMTPVEITYNAISFVIAVVLTVAFT
Sbjct: 241 PYLCGSIAGMIPEAFIYIYSGRLIRTLADMKYGNYKMTPVEITYNAISFVIAVVLTVAFT 300

Query: 301 VYAKRALNDIKESEGILTEEYGISTGHKNPHQERSPSRPVPLDDVV 346
           VYAKRALNDIKESEGILTEEYGISTGHKNPHQERSPSRPVPLDDVV
Sbjct: 301 VYAKRALNDIKESEGILTEEYGISTGHKNPHQERSPSRPVPLDDVV 346



>Os07g0634000 Conserved hypothetical protein
          Length = 425

 Score =  323 bits (827), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/270 (56%), Positives = 200/270 (74%), Gaps = 4/270 (1%)

Query: 80  WMKVLLGCFLLILVSYVFVKWGVPFAFEKVLLPIMQWEASAFGRPXXXXXXXXXXXXFPV 139
           WM++ +G  L+  + + F +WG+P   EKVLLPIM+WEA +FGR             FPV
Sbjct: 126 WMRLGVGGLLVGSIIFAFYEWGLPLLSEKVLLPIMRWEARSFGRHLLAIVLIASLAIFPV 185

Query: 140 TLVPSGPSMWLAGMIFGYGWGFLIIMVGTTIGMVVPYWIGSLFRERLHAWL-KRWPQQIA 198
            L+PS PSMWL G+IFGYG+GFLIIMVGT IGM +PY+IGSLFRERLH WL K+WP++IA
Sbjct: 186 VLLPSSPSMWLTGIIFGYGFGFLIIMVGTAIGMSIPYFIGSLFRERLHEWLEKKWPREIA 245

Query: 199 LIKLAGEGNWFQQFRVVALFRISPFPYTIFNYAVTVTEIKFNPYLCGSIAGMIPEAFIYI 258
           L+KLA +G+WF+QFRV+ L RISPFPY++ NY VTVT+IK+ PY+CGS+ GM+P+A + I
Sbjct: 246 LVKLASKGSWFKQFRVIVLLRISPFPYSMLNYTVTVTQIKYGPYICGSVVGMVPDALVNI 305

Query: 259 YSGRLIRTLADMKYGNYKMTPVEITYNAISFVIAVVLTVAFTVYAKRALNDIKESEGILT 318
           YSGRLI TLA +KY N+++T VEI YN IS  +A ++ + FTVYAKRAL++++ SEG   
Sbjct: 306 YSGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDEMERSEGTCP 365

Query: 319 EEYGISTGH---KNPHQERSPSRPVPLDDV 345
           E  GI+ G    +  HQE S S  VP+D V
Sbjct: 366 EPAGIAHGSTELRAHHQECSNSSSVPIDVV 395



>Os07g0467600 Similar to Plus agglutinin
          Length = 288

 Score =  218 bits (554), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/236 (43%), Positives = 149/236 (63%)

Query: 79  WWMKVLLGCFLLILVSYVFVKWGVPFAFEKVLLPIMQWEASAFGRPXXXXXXXXXXXXFP 138
           WW +V     LL   +   V +  P   +KV+ P+++WE+  F RP            FP
Sbjct: 50  WWAQVAALGILLAGAAAAAVVFLGPLVIKKVIAPVIEWESRTFSRPVIALICFGAIAFFP 109

Query: 139 VTLVPSGPSMWLAGMIFGYGWGFLIIMVGTTIGMVVPYWIGSLFRERLHAWLKRWPQQIA 198
             L+PS P MW+AGM FGY +GFLII    +IGM +P++IGS F  ++H WL++WP++ A
Sbjct: 110 SVLLPSSPFMWMAGMSFGYFYGFLIITAAMSIGMSLPFFIGSAFHSKIHRWLEKWPKKAA 169

Query: 199 LIKLAGEGNWFQQFRVVALFRISPFPYTIFNYAVTVTEIKFNPYLCGSIAGMIPEAFIYI 258
            ++LAGEG+WF QFR VAL RISPFPY +FNYA   T +K+ PY+ GS+AG + E F+ I
Sbjct: 170 FVRLAGEGDWFHQFRAVALLRISPFPYLVFNYASVATNVKYGPYIAGSMAGTVHETFLAI 229

Query: 259 YSGRLIRTLADMKYGNYKMTPVEITYNAISFVIAVVLTVAFTVYAKRALNDIKESE 314
           YSG+L+++LA        ++  +I YN + F +A V T A T+YAK+AL  ++  +
Sbjct: 230 YSGKLLQSLAVATTQGSFLSVDQIIYNGLGFSVAAVSTAAITIYAKKALQKLQADD 285



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,678,225
Number of extensions: 473560
Number of successful extensions: 1075
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1072
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)