BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0372900 Os03g0372900|AK100417
(426 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0372900 Cyclin-like F-box domain containing protein 750 0.0
Os03g0380200 254 8e-68
Os03g0374000 131 9e-31
Os03g0373066 118 8e-27
Os03g0367700 115 7e-26
Os03g0367400 114 1e-25
Os03g0367300 106 4e-23
Os10g0396100 Cyclin-like F-box domain containing protein 94 2e-19
Os03g0367600 87 3e-17
>Os03g0372900 Cyclin-like F-box domain containing protein
Length = 426
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/426 (89%), Positives = 380/426 (89%)
Query: 1 MPDLPTMXXXXXKMGTHAQVQQXXXXXXXXXXXXXXXXAIARCLXXXXXXXXXXXXXXXX 60
MPDLPTM KMGTHAQVQQ AIARCL
Sbjct: 1 MPDLPTMDDDDDKMGTHAQVQQLPDELLLEILLRLPPRAIARCLAVCSAWSSAVSAAAFR 60
Query: 61 XXXXXXXXXVCKATATAIDCCDRDAVVLDAFLGRWHRGNVHTTPRSPRGLVFPAAMAPEP 120
VCKATATAIDCCDRDAVVLDAFLGRWHRGNVHTTPRSPRGLVFPAAMAPEP
Sbjct: 61 RAHADRPAAVCKATATAIDCCDRDAVVLDAFLGRWHRGNVHTTPRSPRGLVFPAAMAPEP 120
Query: 121 DTPWVLDTLVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRAT 180
DTPWVLDTLVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRAT
Sbjct: 121 DTPWVLDTLVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRAT 180
Query: 181 VSPPPGRGAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQRVGDGAWREVP 240
VSPPPGRGAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQRVGDGAWREVP
Sbjct: 181 VSPPPGRGAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQRVGDGAWREVP 240
Query: 241 LPLLEQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVFEPARERFRLME 300
LPLLEQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVFEPARERFRLME
Sbjct: 241 LPLLEQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVFEPARERFRLME 300
Query: 301 APPRRHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLDSSSSDAPRRWRLDAYSL 360
APPRRHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLDSSSSDAPRRWRLDAYSL
Sbjct: 301 APPRRHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLDSSSSDAPRRWRLDAYSL 360
Query: 361 RRRKWTRVCAARPRSGSVGVALLPHRESVADDQPSFGEASRLLDHTIDIDVDDQYLSMNP 420
RRRKWTRVCAARPRSGSVGVALLPHRESVADDQPSFGEASRLLDHTIDIDVDDQYLSMNP
Sbjct: 361 RRRKWTRVCAARPRSGSVGVALLPHRESVADDQPSFGEASRLLDHTIDIDVDDQYLSMNP 420
Query: 421 ITLFCY 426
ITLFCY
Sbjct: 421 ITLFCY 426
>Os03g0380200
Length = 287
Score = 254 bits (649), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 162/286 (56%), Positives = 176/286 (61%), Gaps = 58/286 (20%)
Query: 176 MTRATVSPPPGRGAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQRVGDGA 235
M ATVSPPPGRG +IG YAHPATMRFHLLHAAGEAA GL+V T FR++RVGDGA
Sbjct: 1 MACATVSPPPGRGVIIGAYAHPATMRFHLLHAAGEAACLVDP-GLYVATAFRLRRVGDGA 59
Query: 236 WREVPLPLLEQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVFEPARER 295
WREVPLP LE D A+L+MHGARS+ LHGNLHWLVQRG S G+LQVLVFE ARER
Sbjct: 60 WREVPLPQLEDAD----ARLKMHGARSIRLHGNLHWLVQRG-SGSAGKLQVLVFERARER 114
Query: 296 FRLMEAPPRRHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLDS--SSSDAPR-- 351
FRLM+APPRR GEE+D+ARSRI VLS+GKLCAVAV ATSTMEMWVLD SD R
Sbjct: 115 FRLMDAPPRRRGEEEDMARSRICVLSSGKLCAVAVARATSTMEMWVLDDYHHCSDDARIS 174
Query: 352 RWRL-----------------------------------------------DAYSLRRRK 364
WRL DAYSLRR
Sbjct: 175 GWRLMERVSLVMWDGDGRRDLSRTFTSETQVEAVHGEVEGEEVIVRNGGEVDAYSLRRGA 234
Query: 365 WTRVCAARPRSGSV-GVALLPHRESVADDQPSFGEASRLLDHTIDI 409
W V G V VALL HR+SV SFGEASR L + DI
Sbjct: 235 WLWVRGISSSGGPVLDVALLAHRDSVVHHDVSFGEASRPLRYPDDI 280
>Os03g0374000
Length = 519
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 114/236 (48%), Gaps = 30/236 (12%)
Query: 124 WVLDTLVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRATVSP 183
+ + +LV+GSWDGVLC+ +GR R L P
Sbjct: 109 YSISSLVLGSWDGVLCMAM------------------TTGRRRVRAL-EPSHQRLRHRLR 149
Query: 184 PPGRGAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQRVGDGAWREVPLP- 242
R +G YAHPAT RFH+LHA+G+ P VFRVQ +GD AWR P P
Sbjct: 150 AGRRRQFVGAYAHPATGRFHILHASGKTVGHYYYRKQLAPAVFRVQTIGDAAWRVGPAPP 209
Query: 243 --LLEQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGS-AGPGRLQVLVFEPARERFRLM 299
+ HA ARS ALHG LHWLVQ GG +L++L F+ +RE+ RL
Sbjct: 210 PKITMATTGHA-------AARSAALHGKLHWLVQSGGRWPAVRKLKLLAFDMSREKLRLK 262
Query: 300 EAPPRRHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLDSSSSDAPRRWRL 355
E P R + + AR ++ + GKLC AV +T+ MWVLD D R W+L
Sbjct: 263 ETPERMAAMDLETARISVLPAAAGKLCVFAVEDRGTTVSMWVLDDYHGDHRRSWQL 318
>Os03g0373066
Length = 328
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 87/136 (63%), Gaps = 15/136 (11%)
Query: 128 TLVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRATVSPP-PG 186
T VVGSWDGV+CV+ R R+ + + R RE+VLWNPL ATV PP PG
Sbjct: 193 TWVVGSWDGVVCVDV-EYTSRFFRFGPDLDNTQPERREREFVLWNPLTRACATVPPPAPG 251
Query: 187 --RGAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQRVGD-GAWREVPLPL 243
RG +IG YAHPATMRFHLLHAAGEA R GLF T RV+RVGD GAWREV PL
Sbjct: 252 GDRGVIIGAYAHPATMRFHLLHAAGEAER-----GLFAATAIRVRRVGDGGAWREV--PL 304
Query: 244 LEQQ---DDHAHAQLQ 256
LEQQ D H A +Q
Sbjct: 305 LEQQEEEDGHDDANMQ 320
>Os03g0367700
Length = 449
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 113/235 (48%), Gaps = 33/235 (14%)
Query: 129 LVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRATVSPPPGRG 188
V+GSWDGV+C+ + SR D YVL NPL +V PP RG
Sbjct: 122 FVLGSWDGVVCLVPAGVVRPLSRID-------------RYVLVNPLTKACTSVPPPATRG 168
Query: 189 AVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQRVG--DGAWREV---PLPL 243
VI GYAHP T R+HLLHA R+ RVG + WR++ P P
Sbjct: 169 IVICGYAHPTTSRYHLLHADDAY-----PYNHMAAATIRILRVGEKNNVWRKIARHPAPA 223
Query: 244 LEQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVFEPARERFRLMEAPP 303
+ + ++ GA V+LHG LHWLV SA R + VF+ RE FR M+AP
Sbjct: 224 CVESRTY----IRFGGAPPVSLHGCLHWLVA-PLSAASARPLLSVFDMEREEFRQMDAPE 278
Query: 304 R--RHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLDSSSSDAPRRWRLD 356
+ RHG + +I LS GKLCA P+ S + MW L+ S P WR++
Sbjct: 279 QWARHGNLPHMMGVQIARLS-GKLCAFVNEPSASALGMWTLEDYSD--PSSWRME 330
>Os03g0367400
Length = 440
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 109/234 (46%), Gaps = 41/234 (17%)
Query: 128 TLVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRATVSPPPGR 187
T+V+G WDG+LC A +L G P G + YVL NPL V P
Sbjct: 120 TVVIGFWDGILC---AAHILFG----------PGRG-VERYVLCNPLTEACTIVPAPSTD 165
Query: 188 GAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTV--FRVQRVGDGA-WREVPLPLL 244
G ++GGYAHP T RFH++HA F T+ F + R+G+ + WREV P L
Sbjct: 166 GFLVGGYAHPTTSRFHIMHAN------------FFTTMETFWILRLGENSVWREVRRPAL 213
Query: 245 EQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVFEPARERFRLMEAPPR 304
++ A V LHG LHWL SA + V VF RE FRLMEAP
Sbjct: 214 ATM----RVCIKFLHAPPVRLHGCLHWLAS---SASSAQFLVAVFNMEREEFRLMEAPGG 266
Query: 305 ---RHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLDSSSSDAPRRWRL 355
R G + +GKLCA+A P + + MWVLD S P WRL
Sbjct: 267 QGVRFGSHSHTMMGMHITHCHGKLCALADEPGANALGMWVLDDYSD--PTSWRL 318
>Os03g0367300
Length = 459
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 129 LVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRATVSPPPGRG 188
V+GSWDGV+C+ R AG P++ + YVL NPL +V PP RG
Sbjct: 122 FVLGSWDGVVCLV--------PRPTAGFVR-PRNP-IDRYVLVNPLTKACTSVPPPATRG 171
Query: 189 AVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQRVG--DGAWREVPLPLLEQ 246
VI GYAHP T R+HLLHA S ++ RVG + WR++
Sbjct: 172 IVICGYAHPTTSRYHLLHADSFF-----SYDGTARATIQILRVGEKNNVWRKIARHPAPA 226
Query: 247 QDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVFEPARERFRLMEAPPR-- 304
+ +++ GA V+LHG LHWLV + R + VF+ RE FR M+ P +
Sbjct: 227 GVVESRTYIRLGGAPPVSLHGCLHWLV----APSSARPLLSVFDMEREEFRQMDTPEQWA 282
Query: 305 RHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLDSSSSDAPRRWRLD 356
RHG + +I S GKLCA P+ S + MW+L+ S P WRL+
Sbjct: 283 RHGNLPHMMSVQIARRS-GKLCAFVHEPSASALGMWMLEDYSD--PSSWRLE 331
>Os10g0396100 Cyclin-like F-box domain containing protein
Length = 425
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 51/234 (21%)
Query: 119 EPDTPWVLDT------LVVGSWDGVLCVE--RGAPLLRGSRWDAGVHHWPKSGRLREYVL 170
EPD + L++ ++G WDG++C++ R +P R V+
Sbjct: 98 EPDRSFYLESREDGACKLLGCWDGMMCIDVRRDSPACRDG-----------------IVV 140
Query: 171 WNPLAMTRATV-SPPPGRGAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTVFRVQ 229
NP++M A V SP P G I GYAHP T FHL++ + +F+V
Sbjct: 141 VNPISMAYAVVRSPMPDGGEFIAGYAHPDTFAFHLMYCCHNQGK----------VIFQVI 190
Query: 230 RVGDGAWREVPLPLLEQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVF 289
+ GD WRE+ L + G SVALHG LHW ++ G+ +LV+
Sbjct: 191 KAGDSQWREIAADRLAI----SGIDFDKQGISSVALHGGLHWQLR----TNSGQWVMLVY 242
Query: 290 EPARERFRLMEAPPRRHGEEDDLARSRIVVLSNGKLCAVAVRPATSTMEMWVLD 343
+ E+FR + AP + + R + + +G+LC++ + P + T E+WVL+
Sbjct: 243 DMVTEKFRSIAAP------QCAITWVRGLSVLSGRLCSIVI-PESMTAEIWVLE 289
>Os03g0367600
Length = 424
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 104/236 (44%), Gaps = 63/236 (26%)
Query: 128 TLVVGSWDGVLCVERGAPLLRGSRWDAGVHHWPKSGRLREYVLWNPLAMTRATVSPPPGR 187
T V+G WDG+LC A +L G P G + YVL NPL V P
Sbjct: 122 TAVIGLWDGILC---AAHILFG----------PGRG-VERYVLCNPLTEACTIVPAPATD 167
Query: 188 GAVIGGYAHPATMRFHLLHAAGEAARRPGSLGLFVPTV--FRVQRVGDGA-WREVPLPLL 244
G ++GGYAHP T RFH++H F T+ F + R+G+ + WRE
Sbjct: 168 GFLVGGYAHPTTSRFHIMHTN------------FFTTMETFWILRLGENSVWRET----- 210
Query: 245 EQQDDHAHAQLQMHGARSVALHGNLHWLVQRGGSAGPGRLQVLVFEPARERFRLMEAPPR 304
AR +L G + G+ GRLQ E RE FRLMEAP
Sbjct: 211 ---------------ARLSSLAGLVII-----GAVSRGRLQQFNME--REEFRLMEAPGG 248
Query: 305 RHGEEDDLARSRI-----VVLSNGKLCAVAVRPATSTMEMWVLDSSSSDAPRRWRL 355
+ + +L+ S + +GKLCA+A P + + +WVL+ S P WRL
Sbjct: 249 QGVRDGNLSHSHTMMGIHITHCHGKLCALADEPGANALGLWVLEDYSD--PTSWRL 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,960,919
Number of extensions: 774874
Number of successful extensions: 1816
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1784
Number of HSP's successfully gapped: 9
Length of query: 426
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 322
Effective length of database: 11,605,545
Effective search space: 3736985490
Effective search space used: 3736985490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)