BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0358200 Os03g0358200|016-090-F06
         (62 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0358200  Conserved hypothetical protein                       85   1e-17
Os07g0655400  Conserved hypothetical protein                       69   1e-12
>Os03g0358200 Conserved hypothetical protein
          Length = 62

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 22 EPLWGAKELLKFIFLVNLSTSACVFVTAIILYYITQQEIYL 62
          EPLWGAKELLKFIFLVNLSTSACVFVTAIILYYITQQEIYL
Sbjct: 22 EPLWGAKELLKFIFLVNLSTSACVFVTAIILYYITQQEIYL 62
>Os07g0655400 Conserved hypothetical protein
          Length = 316

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 35/41 (85%)

Query: 22  EPLWGAKELLKFIFLVNLSTSACVFVTAIILYYITQQEIYL 62
           EPLWG+KEL KFIF+VN STS CVF+TAI LYY TQ+E YL
Sbjct: 94  EPLWGSKELSKFIFVVNFSTSLCVFITAIALYYTTQEESYL 134
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.143    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 944,490
Number of extensions: 14877
Number of successful extensions: 29
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 2
Length of query: 62
Length of database: 17,035,801
Length adjustment: 34
Effective length of query: 28
Effective length of database: 15,260,525
Effective search space: 427294700
Effective search space used: 427294700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)