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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0358200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0596) R2 : 0.607
β1 : -2.14 (0.213) R2dD : 0.102 R2D : -0.0854
β2 : 2.88 (0.131) R2dC : 0.429 R2C : 0.357
β3 : 14 (2.1) R2dE : 0.589 R2E : -0.428
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -40.1 (6.71) R2dD*E : 0.465 R2D*E : -0.679
γ1 : -1.22 (0.116) R2dN8 : 0.127 R2N8 : 0.0596
σ : 1.02
deviance : 476.96
__
_____
C
peak time of C : 22.9
E
wheather : precipitation
threshold : 0.05829
memory length : 177
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.86
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
470.32 1.02 5.54 -2.19 2.88 13.7 -1.28 -38.5 -1.22 22.9 0.07432 179 5.68 --
520.22 1.07 5.41 -1.7 2.89 1.59 -1.28 -- -1.28 23 0.07432 179 5.68 --
476.96 1.02 5.54 -2.14 2.88 14 -- -40.1 -1.22 22.9 0.05829 177 5.86 --
508.78 1.05 5.4 -1.72 2.88 2.62 -- -- -1.26 23 0.5 179 3.93 --
984.56 1.46 5.46 -2.16 -- 15.8 -- -40.3 -1.18 -- 0.08493 179 6.61 --
523.41 1.07 5.41 -1.67 2.9 -- -1.22 -- -1.29 23 -- -- -- --
529.66 1.08 5.41 -1.62 2.9 -- -- -- -1.28 23 -- -- -- --
1014.05 1.48 5.33 -1.68 -- 4.24 -- -- -1.23 -- 0.5206 181 5.78 --
585.66 1.13 5.36 -- 2.86 2.27 -- -- -1.08 23 0.9938 179 4.32 --
1054.21 1.52 5.33 -1.56 -- -- -- -- -1.26 -- -- -- -- --
598.89 1.14 5.37 -- 2.89 -- -- -- -1.1 22.9 -- -- -- --
1088.44 1.54 5.29 -- -- 3.19 -- -- -1.09 -- 1 271 4.09 --
1118.1 1.56 5.29 -- -- -- -- -- -1.09 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 473.29 precipitation 0.1 720 < th dose independent rect. 14 17
2 473.29 precipitation 0.1 720 < th dose dependent rect. 14 17
3 474.51 precipitation 0.1 270 > th dose independent rect. 16 13
16 476.99 precipitation 0.1 270 > th dose dependent rect. 2 2
18 477.25 precipitation 0.1 270 > th dose independent rect. 2 2
21 477.79 precipitation 0.1 270 > th dose independent sin 12 NA
47 480.12 temperature 30.0 90 < th dose dependent rect. 3 2
49 480.50 radiation 1.0 30 < th dose independent rect. 3 3
50 480.57 precipitation 0.1 270 > th dose dependent sin 11 NA
57 481.19 precipitation 0.1 270 > th dose independent rect. 19 9
60 481.23 radiation 1.0 30 < th dose independent rect. 3 11
63 481.42 radiation 1.0 30 < th dose independent rect. 3 9
66 481.49 precipitation 0.1 720 < th dose independent rect. 14 9
70 481.49 precipitation 0.1 720 < th dose dependent rect. 14 9
85 482.67 temperature 25.0 10 < th dose independent rect. 3 4
86 482.80 precipitation 0.1 720 < th dose independent rect. 14 11
87 482.80 precipitation 0.1 720 < th dose dependent rect. 14 11
89 482.90 precipitation 0.1 90 < th dose independent rect. 5 22
90 482.90 precipitation 0.1 90 < th dose dependent rect. 5 22
94 483.00 radiation 1.0 30 < th dose dependent rect. 3 3
96 483.27 temperature 30.0 10 < th dose dependent rect. 3 3
97 483.35 precipitation 0.1 720 < th dose independent rect. 11 15
98 483.35 precipitation 0.1 720 < th dose dependent rect. 11 15
99 483.41 humidity 80.0 30 > th dose independent rect. 3 3
100 483.51 precipitation 0.1 720 < th dose independent rect. 13 13
101 483.51 precipitation 0.1 720 < th dose dependent rect. 13 13
103 483.65 humidity 70.0 90 > th dose dependent rect. 3 2
106 483.75 atmosphere 1000.0 10 > th dose independent rect. 3 3
109 483.80 radiation 20.0 30 < th dose dependent rect. 3 3
110 483.82 precipitation 0.1 270 > th dose dependent rect. 16 14
117 483.94 humidity 50.0 10 > th dose dependent rect. 16 14
119 483.99 temperature 15.0 14400 > th dose independent rect. 1 2
126 484.16 radiation 1.0 30 < th dose dependent rect. 3 11
136 484.36 precipitation 0.1 720 < th dose independent rect. 19 7
138 484.36 precipitation 0.1 720 < th dose dependent rect. 19 7
141 484.38 radiation 1.0 30 < th dose dependent rect. 3 9
146 484.41 temperature 15.0 14400 > th dose independent rect. 20 8
148 484.42 humidity 50.0 10 > th dose dependent rect. 3 3
183 484.71 temperature 15.0 14400 < th dose independent rect. 1 2
194 484.87 wind 9.0 90 < th dose independent rect. 3 2
195 484.87 temperature 10.0 90 > th dose independent rect. 3 2
198 484.87 humidity 50.0 90 > th dose independent rect. 3 2
202 484.87 atmosphere 1010.0 90 < th dose independent rect. 3 2
204 484.87 radiation 20.0 90 < th dose independent rect. 3 2
207 484.87 temperature 10.0 90 > th dose independent rect. 5 22
211 484.92 temperature 15.0 14400 < th dose independent sin 11 NA
212 484.92 temperature 10.0 30 > th dose dependent rect. 6 21
215 484.95 temperature 15.0 14400 < th dose independent rect. 24 4
217 484.95 temperature 15.0 14400 < th dose independent rect. 18 14
219 484.96 temperature 15.0 14400 > th dose independent sin 13 NA
224 484.96 temperature 15.0 14400 < th dose independent rect. 18 11
227 484.96 temperature 15.0 14400 > th dose independent rect. 21 22
240 485.00 temperature 15.0 14400 > th dose independent rect. 8 21
250 485.03 temperature 15.0 14400 > th dose independent rect. 16 21
274 485.07 temperature 15.0 14400 > th dose independent rect. 24 19
279 485.07 temperature 15.0 14400 > th dose independent rect. 24 23
282 485.08 temperature 15.0 14400 < th dose independent rect. 24 16
288 485.09 wind 9.0 10 < th dose independent rect. 3 3
289 485.09 temperature 10.0 10 > th dose independent rect. 3 3
292 485.09 humidity 50.0 10 > th dose independent rect. 3 3
296 485.09 atmosphere 1010.0 10 < th dose independent rect. 3 3
298 485.09 radiation 20.0 10 < th dose independent rect. 3 3
305 485.09 temperature 10.0 10 > th dose independent rect. 6 21
318 485.11 temperature 15.0 14400 > th dose independent rect. 10 20
323 485.11 temperature 15.0 14400 > th dose independent rect. 4 23
328 485.12 temperature 15.0 14400 > th dose independent rect. 11 18
333 485.12 temperature 15.0 14400 > th dose independent rect. 10 23
335 485.13 temperature 15.0 14400 > th dose independent no NA NA
372 485.16 atmosphere 1015.0 90 < th dose dependent rect. 3 2
381 485.18 temperature 15.0 14400 < th dose independent rect. 24 11
389 485.19 atmosphere 995.0 30 > th dose dependent rect. 3 3
453 485.33 temperature 15.0 14400 > th dose independent rect. 2 23
465 485.36 atmosphere 995.0 90 > th dose independent rect. 5 22
473 485.40 temperature 15.0 14400 < th dose independent rect. 24 9
496 485.47 temperature 15.0 14400 < th dose independent rect. 5 2
531 485.56 humidity 80.0 30 > th dose dependent rect. 21 9
551 485.62 temperature 15.0 14400 < th dose independent rect. 9 21
556 485.63 atmosphere 995.0 10 > th dose independent rect. 6 21
625 485.80 precipitation 0.1 90 < th dose independent rect. 3 2
627 485.80 precipitation 0.1 90 < th dose dependent rect. 3 2
628 485.81 temperature 15.0 14400 > th dose independent sin 2 NA
659 485.87 radiation 1.0 720 < th dose dependent rect. 17 11
669 485.91 wind 1.0 90 > th dose independent rect. 5 22
672 485.93 temperature 15.0 14400 < th dose independent no NA NA
674 485.93 wind 9.0 1440 < th dose independent rect. 4 3
675 485.93 temperature 10.0 1440 > th dose independent rect. 4 3
678 485.93 temperature 30.0 1440 < th dose independent rect. 4 3
682 485.93 humidity 50.0 1440 > th dose independent rect. 4 3
687 485.93 atmosphere 995.0 1440 > th dose independent rect. 4 3
688 485.93 atmosphere 1015.0 1440 < th dose independent rect. 4 3
689 485.93 radiation 40.0 1440 < th dose independent rect. 4 3
699 485.93 temperature 10.0 1440 > th dose independent rect. 7 21
778 486.26 wind 9.0 10 < th dose independent rect. 6 21
799 486.34 radiation 40.0 30 < th dose dependent rect. 6 21
837 486.54 temperature 15.0 14400 < th dose independent rect. 4 23
854 486.71 humidity 70.0 30 > th dose independent rect. 6 21
866 486.81 precipitation 0.1 720 < th dose independent rect. 5 16
868 486.81 precipitation 0.1 720 < th dose dependent rect. 5 16
880 486.98 temperature 25.0 270 < th dose independent rect. 23 5
883 487.00 temperature 15.0 14400 < th dose independent rect. 4 7
884 487.00 temperature 15.0 14400 > th dose independent rect. 5 10
886 487.02 radiation 1.0 720 < th dose independent rect. 17 11
887 487.02 radiation 1.0 90 < th dose independent rect. 21 23
921 487.37 radiation 30.0 30 < th dose independent rect. 6 21
924 487.39 temperature 15.0 14400 < th dose independent rect. 5 5
936 487.48 precipitation 0.1 270 > th dose dependent rect. 19 10
944 487.55 precipitation 0.1 270 < th dose independent sin 15 NA
946 487.55 precipitation 0.1 270 < th dose dependent sin 15 NA
983 487.79 precipitation 0.1 720 < th dose independent rect. 4 23
984 487.79 precipitation 0.1 720 < th dose dependent rect. 4 23
988 487.84 wind 7.0 720 < th dose independent rect. 20 6