BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0353400 Os03g0353400|AK062176
         (160 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0353400  Similar to Poly(A)-binding protein C-terminal ...   240   4e-64
Os07g0661400  Conserved hypothetical protein                      106   9e-24

>Os03g0353400 Similar to Poly(A)-binding protein C-terminal interacting protein 6
          Length = 160

 Score =  240 bits (612), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 124/160 (77%)

Query: 1   MSATAVSSLNPDAPLFIPAAFRQVEDFSPQWWDLVKTTAWFRDHWFHEHQQLDEMXXXXX 60
           MSATAVSSLNPDAPLFIPAAFRQVEDFSPQWWDLVKTTAWFRDHWFHEHQQLDEM     
Sbjct: 1   MSATAVSSLNPDAPLFIPAAFRQVEDFSPQWWDLVKTTAWFRDHWFHEHQQLDEMADSLA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTHNLLVDPPQPPAALKTDAVLKALSLVS 120
                                          QTHNLLVDPPQPPAALKTDAVLKALSLVS
Sbjct: 61  LHDAAADDDDLAGLLPDDAFDDDDDDDLFFDQTHNLLVDPPQPPAALKTDAVLKALSLVS 120

Query: 121 PKGGDAPRGLREKPRHSEKPTKYAGSPRSGGAPRVIHQPR 160
           PKGGDAPRGLREKPRHSEKPTKYAGSPRSGGAPRVIHQPR
Sbjct: 121 PKGGDAPRGLREKPRHSEKPTKYAGSPRSGGAPRVIHQPR 160



>Os07g0661400 Conserved hypothetical protein
          Length = 154

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 90/166 (54%), Gaps = 18/166 (10%)

Query: 1   MSATAVSSLNPDAPLFIPAAFRQVEDFSPQWWDLVKTTAWFRDHWFHEHQQLDEMXXXXX 60
           MSA A+SSLNP+A  FIPAAFR+VEDFSP+WW+LVKTTAWFRDHWF +HQ  ++      
Sbjct: 1   MSAMAMSSLNPNAAPFIPAAFRRVEDFSPEWWELVKTTAWFRDHWFRQHQMYED------ 54

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTHNLLV--DPP---QPPAALKTDA-VLK 114
                                           T +L    DPP   +P      DA VL+
Sbjct: 55  AAAEEDHHRQVFDDDLAALLPDDSLDLLDMVDTDDLFYTPDPPVHHKPTTTPTLDADVLR 114

Query: 115 ALSLVSPKGGDAPRGLREKPRHSEKPTKYAGSPRSGGAPRVIHQPR 160
           ALSL SP+ G A  G+    RH+EKP ++  + + G A  VIHQPR
Sbjct: 115 ALSLNSPRLGGA--GM---VRHAEKPAQFVAA-KGGAARHVIHQPR 154



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,558,968
Number of extensions: 218687
Number of successful extensions: 696
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)