BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0341100 Os03g0341100|AK121580
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0341100  Similar to 60S ribosomal protein L18                376   e-105
Os07g0674700  Similar to 60S ribosomal protein L18                353   3e-98
Os05g0155100  Similar to 60S ribosomal protein L18                342   1e-94
AK110540                                                          307   2e-84

>Os03g0341100 Similar to 60S ribosomal protein L18
          Length = 187

 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
           MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60

Query: 61  PLSLRRLVRFMEGKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECL 120
           PLSLRRLVRFMEGKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECL
Sbjct: 61  PLSLRRLVRFMEGKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRR 180

Query: 181 NSKGFKV 187
           NSKGFKV
Sbjct: 181 NSKGFKV 187



>Os07g0674700 Similar to 60S ribosomal protein L18
          Length = 195

 Score =  353 bits (907), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 177/195 (90%), Positives = 184/195 (94%), Gaps = 8/195 (4%)

Query: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
           MGIDLVAGGRNKKTKRTAP+S+DVYLKLIVKLYRFLVRRTKS FNAVIL+RLFMSKTNRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60

Query: 61  PLSLRRLVRFMEGK--------ENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARI 112
           PLS+RRLVRFMEGK         +QIAVIVGTVTDDKR+YEVPAMKVAALRFTETARARI
Sbjct: 61  PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120

Query: 113 VNTGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 172
           +N GGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180

Query: 173 FEKARGRRNSKGFKV 187
           FEKARGRRNSKGFKV
Sbjct: 181 FEKARGRRNSKGFKV 195



>Os05g0155100 Similar to 60S ribosomal protein L18
          Length = 188

 Score =  342 bits (876), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/188 (89%), Positives = 179/188 (95%), Gaps = 1/188 (0%)

Query: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
           MGIDLVAGGRNKKTKRTAP+SDDVYLKL+VKLYRFLVRRTKS FNAVIL+RLFMSKTNRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60

Query: 61  PLSLRRLVRFMEGKE-NQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGEC 119
           PLSLRRL +FMEGKE N IAVIVGTVTDDKR+ E+P MKV ALRFTETARARIVN GGEC
Sbjct: 61  PLSLRRLAKFMEGKEENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGEC 120

Query: 120 LTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGR 179
           LTFDQLALRAPLG+NTVLLRGPKNAREAV+HFG APGVPHS+TKPYVRSKGRKFEKARGR
Sbjct: 121 LTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 180

Query: 180 RNSKGFKV 187
           RNS+GFKV
Sbjct: 181 RNSRGFKV 188



>AK110540 
          Length = 187

 Score =  307 bits (787), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 167/186 (89%)

Query: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
           MGIDL+AGGRNKKT RTAPKSD+VYLKL+VKLYRFLVRRT S FN V+L+RLFMSKTNRP
Sbjct: 1   MGIDLIAGGRNKKTARTAPKSDNVYLKLLVKLYRFLVRRTDSNFNQVVLKRLFMSKTNRP 60

Query: 61  PLSLRRLVRFMEGKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECL 120
           PLSL +L +FM GKE++IAV+V TVTDD R++EVP ++V ALRFTETARARIV  GGECL
Sbjct: 61  PLSLSKLAQFMAGKEDKIAVLVATVTDDARLFEVPKLRVCALRFTETARARIVKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRR 180
           TFDQLAL  P G++ VLLRGPKN REAVKHFGPAPGVPHS+TKPYVR+KGRKFEKARGRR
Sbjct: 121 TFDQLALERPTGKDCVLLRGPKNNREAVKHFGPAPGVPHSSTKPYVRAKGRKFEKARGRR 180

Query: 181 NSKGFK 186
            S+G+K
Sbjct: 181 KSRGYK 186



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,211,602
Number of extensions: 233833
Number of successful extensions: 512
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 4
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)