Os03g0341100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L18.
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Os03g0341100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L18.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.11 | 0.486 | 12.1 | -0.367 | 1.08 | 0.586 | 0.917 | -2 | -0.353 | 16.4 | 20.21 | 4145 | -- | -- |
| 110.58 | 0.49 | 12 | 0.00973 | 1.1 | 0.992 | 0.965 | -- | -0.246 | 16.4 | 19.77 | 2749 | -- | -- |
| 109.36 | 0.487 | 12.1 | -0.377 | 1.08 | 0.587 | -- | -2.1 | -0.358 | 16.4 | 20.2 | 4121 | -- | -- |
| 113.04 | 0.495 | 12 | 0.00773 | 1.1 | 1 | -- | -- | -0.251 | 16.4 | 19.8 | 2745 | -- | -- |
| 171.91 | 0.611 | 12.1 | -0.311 | -- | 0.544 | -- | -1.88 | -0.346 | -- | 20.56 | 2961 | -- | -- |
| 128.92 | 0.532 | 11.9 | 0.531 | 1.05 | -- | 1.1 | -- | -0.0134 | 16.5 | -- | -- | -- | -- |
| 132.17 | 0.538 | 11.9 | 0.539 | 1.06 | -- | -- | -- | -0.00751 | 16.4 | -- | -- | -- | -- |
| 174.5 | 0.618 | 12 | 0.343 | -- | 0.619 | -- | -- | -0.152 | -- | 20.56 | 2961 | -- | -- |
| 113.04 | 0.495 | 12 | -- | 1.1 | 1 | -- | -- | -0.253 | 16.4 | 19.83 | 2745 | -- | -- |
| 192.26 | 0.648 | 11.9 | 0.497 | -- | -- | -- | -- | -0.0355 | -- | -- | -- | -- | -- |
| 139.82 | 0.553 | 12 | -- | 1.05 | -- | -- | -- | -0.0675 | 16.4 | -- | -- | -- | -- |
| 175.08 | 0.616 | 12 | -- | -- | 0.96 | -- | -- | -0.258 | -- | 20.49 | 1682 | -- | -- |
| 198.78 | 0.658 | 11.9 | -- | -- | -- | -- | -- | -0.0907 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.13 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 3 | 101.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 16 | 102.88 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 21 | 103.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 31 | 103.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 42 | 103.85 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 52 | 104.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 57 | 104.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 86 | 105.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 88 | 105.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 11 |
| 89 | 105.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 144 | 105.78 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 147 | 105.79 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 191 | 106.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 201 | 106.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 219 | 106.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 358 | 106.90 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 377 | 106.97 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 380 | 106.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 427 | 107.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 432 | 107.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 471 | 107.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 484 | 107.37 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 491 | 107.39 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 504 | 107.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 516 | 107.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 517 | 107.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 523 | 107.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 531 | 107.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 536 | 107.46 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 540 | 107.46 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 551 | 107.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 563 | 107.50 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 566 | 107.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 573 | 107.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 576 | 107.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 583 | 107.53 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 587 | 107.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 655 | 107.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 670 | 107.72 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 716 | 107.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 783 | 107.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 857 | 108.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 882 | 108.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 951 | 108.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 953 | 108.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 968 | 108.38 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 979 | 108.40 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 984 | 108.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |