BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0341100 Os03g0341100|AK121580
         (187 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27850.1  | chr5:9873169-9874297 FORWARD LENGTH=188            322   5e-89
AT3G05590.1  | chr3:1621511-1622775 FORWARD LENGTH=188            320   2e-88
AT2G47570.1  | chr2:19515898-19516717 REVERSE LENGTH=136          205   1e-53

>AT5G27850.1 | chr5:9873169-9874297 FORWARD LENGTH=188
          Length = 187

 Score =  322 bits (826), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 155/187 (82%), Positives = 172/187 (91%)

Query: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
           MGIDL+AGG++KKTKRTAPKSDDVYLKL+VKLYRFLVRR+ S FNAVIL+RLFMSK N+ 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLRRLVRFMEGKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECL 120
           PLSL RLV FM GK+++IAV+VGT+TDD RV+E+PAMKV ALRFTE ARARI   GGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSNTKPYVR KGRKFEKARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSKGFKV 187
            S+GFKV
Sbjct: 181 KSRGFKV 187



>AT3G05590.1 | chr3:1621511-1622775 FORWARD LENGTH=188
          Length = 187

 Score =  320 bits (821), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/187 (82%), Positives = 171/187 (91%)

Query: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
           MGIDL+AGG++KKTKRTAPKSDDVYLKL VKLYRFLVRRT S FN VIL+RLFMSK N+ 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PLSLRRLVRFMEGKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECL 120
           PLSL RLV FM GKE++IAV+VGT+TDD RV+E+PAMKV ALRFTE ARARI   GGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS++KPYVR+KGRKFEKARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSKGFKV 187
            S+GFKV
Sbjct: 181 KSRGFKV 187



>AT2G47570.1 | chr2:19515898-19516717 REVERSE LENGTH=136
          Length = 135

 Score =  205 bits (521), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 113/135 (83%), Gaps = 1/135 (0%)

Query: 54  MSKTNRPPLSLRRLVRFMEGKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIV 113
           MSK N+ PLSL RLVR+M+GK+ +IAVIVGTVTDD R+ +VPA+ V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 NTGGECLTFDQLALRAP-LGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 172
             GGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHS+TKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 173 FEKARGRRNSKGFKV 187
            E ARGRR S+GFKV
Sbjct: 121 IEIARGRRRSRGFKV 135



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,866,704
Number of extensions: 144151
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 3
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)