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Os07g0674700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 60S ribosomal protein L18.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0241) R2 : 0.334
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.932 (0.0631) R2dC : 0.32 R2C : 0.309
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.185 (0.0507) R2dN8 : 0.0252 R2N8 : 0.0143
σ : 0.454
deviance : 94.34
__
_____
C
peak time of C : 18.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.71 0.366 11.8 0.326 0.945 -0.0994 0.686 -2.73 0.108 18.3 15.18 4868 -- --
67.21 0.385 11.7 0.934 0.905 0.281 0.614 -- 0.253 18.5 12.8 11527 -- --
61.67 0.366 11.8 0.313 0.942 -0.0584 -- -2.76 0.108 18.3 14.9 4284 -- --
68.15 0.387 11.7 0.921 0.905 0.302 -- -- 0.252 18.5 11.19 10991 -- --
107.71 0.483 11.8 0.301 -- -0.137 -- -2.86 0.0997 -- 14.89 4227 -- --
67.96 0.386 11.7 0.987 0.943 -- 0.657 -- 0.292 18.3 -- -- -- --
69.03 0.389 11.7 0.98 0.946 -- -- -- 0.295 18.2 -- -- -- --
101.32 0.469 11.7 0.755 -- 0.972 -- -- 0.142 -- 10.8 294 -- --
77.33 0.41 11.8 -- 0.946 0.664 -- -- -0.0127 18.2 -0.2989 47520 -- --
115.46 0.502 11.7 0.954 -- -- -- -- 0.274 -- -- -- -- --
94.34 0.454 11.7 -- 0.932 -- -- -- 0.185 18.3 -- -- -- --
115.3 0.5 11.7 -- -- 1.23 -- -- 0.0283 -- 8.334 323 -- --
139.48 0.551 11.7 -- -- -- -- -- 0.168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.69 temperature 10.0 43200 > th dose independent rect. 10 5
3 55.86 wind 3.0 4320 > th dose independent rect. 8 1
4 55.89 wind 3.0 4320 < th dose independent rect. 8 1
5 56.32 radiation 20.0 1440 < th dose dependent rect. 11 2
8 56.73 wind 5.0 4320 < th dose dependent rect. 8 1
9 56.93 radiation 20.0 1440 < th dose independent rect. 12 1
20 57.67 wind 1.0 4320 > th dose dependent rect. 8 1
23 57.78 radiation 10.0 1440 > th dose independent rect. 12 1
29 58.01 radiation 1.0 1440 < th dose independent rect. 11 1
30 58.01 radiation 1.0 1440 < th dose dependent rect. 11 1
32 58.04 wind 1.0 14400 > th dose independent rect. 24 2
33 58.09 radiation 10.0 1440 < th dose dependent rect. 9 6
38 58.19 wind 1.0 14400 < th dose independent rect. 24 2
41 58.21 temperature 10.0 10 > th dose dependent rect. 9 19
43 58.29 temperature 15.0 270 > th dose dependent rect. 9 1
61 58.65 atmosphere 1005.0 10 < th dose dependent rect. 24 10
67 58.73 wind 5.0 30 < th dose independent rect. 4 5
69 58.74 temperature 15.0 10 > th dose dependent rect. 9 5
70 58.76 atmosphere 1005.0 10 > th dose dependent rect. 3 6
100 58.99 temperature 20.0 10 > th dose independent rect. 9 19
103 58.99 wind 9.0 10 < th dose dependent rect. 4 5
121 59.14 wind 5.0 270 < th dose independent rect. 4 1
122 59.14 temperature 10.0 10 > th dose dependent rect. 4 5
140 59.29 wind 3.0 14400 < th dose dependent rect. 14 1
141 59.31 precipitation 0.1 10 < th dose independent rect. 4 5
143 59.31 precipitation 0.1 10 < th dose dependent rect. 4 5
144 59.32 wind 9.0 10 < th dose independent rect. 9 19
156 59.37 wind 1.0 43200 < th dose independent rect. 6 21
157 59.38 wind 5.0 43200 < th dose independent rect. 8 2
161 59.39 wind 1.0 43200 > th dose independent rect. 6 21
165 59.40 wind 9.0 14400 < th dose independent rect. 23 4
175 59.43 temperature 10.0 10 > th dose independent rect. 4 5
179 59.43 temperature 30.0 10 < th dose independent rect. 4 5
181 59.43 humidity 50.0 10 > th dose independent rect. 4 5
185 59.43 atmosphere 995.0 10 > th dose independent rect. 4 5
187 59.43 atmosphere 1015.0 10 < th dose independent rect. 4 5
189 59.43 temperature 10.0 10 > th dose independent rect. 9 19
195 59.45 radiation 20.0 4320 > th dose dependent rect. 16 16
198 59.46 wind 1.0 43200 > th dose independent rect. 13 14
205 59.49 wind 3.0 43200 > th dose independent rect. 8 1
213 59.51 temperature 15.0 4320 > th dose dependent rect. 18 1
220 59.53 wind 1.0 43200 < th dose dependent rect. 6 18
226 59.57 atmosphere 1005.0 10 > th dose independent rect. 4 5
237 59.61 wind 1.0 43200 < th dose independent rect. 6 19
241 59.62 radiation 40.0 30 < th dose independent rect. 4 5
244 59.62 radiation 10.0 1440 < th dose independent rect. 12 16
245 59.62 atmosphere 995.0 10 > th dose independent rect. 9 19
247 59.62 temperature 15.0 4320 > th dose dependent rect. 16 1
253 59.63 wind 7.0 270 < th dose dependent rect. 4 1
254 59.63 temperature 15.0 4320 > th dose dependent rect. 16 3
263 59.64 radiation 10.0 1440 < th dose independent rect. 12 10
264 59.64 radiation 10.0 1440 < th dose independent rect. 12 13
274 59.65 temperature 30.0 4320 < th dose dependent rect. 18 1
332 59.76 precipitation 0.1 30 < th dose independent rect. 9 19
340 59.76 precipitation 0.1 30 < th dose dependent rect. 9 19
342 59.77 radiation 20.0 4320 < th dose independent rect. 17 4
357 59.80 wind 3.0 43200 > th dose dependent rect. 8 1
363 59.81 wind 1.0 14400 < th dose independent rect. 13 13
369 59.82 radiation 40.0 10 < th dose independent rect. 4 16
373 59.83 humidity 90.0 10 < th dose independent rect. 2 7
409 59.90 temperature 20.0 10 > th dose independent rect. 9 5
442 59.93 radiation 10.0 4320 > th dose dependent rect. 17 14
443 59.94 temperature 20.0 270 > th dose independent rect. 9 1
458 59.95 temperature 10.0 270 > th dose dependent rect. 6 7
463 59.96 wind 1.0 43200 > th dose dependent rect. 1 3
470 59.98 wind 1.0 43200 > th dose independent rect. 7 4
472 59.98 wind 5.0 43200 < th dose independent rect. 24 14
473 59.98 wind 5.0 43200 < th dose dependent rect. 2 2
489 60.00 temperature 20.0 4320 < th dose independent rect. 16 3
494 60.00 wind 7.0 43200 < th dose dependent rect. 8 1
507 60.01 atmosphere 1005.0 270 > th dose dependent rect. 4 1
524 60.03 wind 5.0 43200 > th dose independent rect. 1 12
525 60.03 wind 5.0 43200 > th dose independent rect. 24 14
568 60.05 humidity 90.0 720 > th dose dependent rect. 22 3
570 60.05 wind 3.0 43200 > th dose dependent rect. 24 11
574 60.06 temperature 20.0 4320 > th dose independent rect. 16 2
592 60.08 precipitation 0.1 270 < th dose independent rect. 4 1
597 60.08 precipitation 0.1 270 < th dose dependent rect. 4 1
598 60.08 radiation 20.0 4320 > th dose dependent rect. 6 2
631 60.10 temperature 20.0 4320 < th dose independent rect. 16 1
636 60.10 atmosphere 1000.0 30 > th dose independent rect. 20 8
647 60.10 humidity 70.0 43200 > th dose dependent rect. 18 16
659 60.12 radiation 30.0 4320 > th dose independent rect. 7 1
710 60.14 wind 1.0 43200 < th dose independent rect. 12 15
731 60.15 humidity 70.0 43200 > th dose dependent rect. 19 6
749 60.17 wind 5.0 43200 < th dose independent sin 6 NA
792 60.19 humidity 90.0 720 > th dose dependent rect. 22 1
798 60.19 radiation 20.0 1440 < th dose dependent rect. 11 17
817 60.21 wind 5.0 43200 > th dose independent sin 6 NA
824 60.21 temperature 20.0 4320 < th dose dependent rect. 18 1
835 60.21 radiation 20.0 1440 < th dose dependent rect. 11 14
852 60.22 radiation 1.0 270 < th dose dependent rect. 4 1
870 60.23 wind 3.0 14400 < th dose independent rect. 14 1
917 60.26 radiation 20.0 14400 < th dose independent rect. 5 1
930 60.27 humidity 90.0 4320 < th dose independent rect. 16 1
961 60.29 radiation 10.0 1440 < th dose independent sin 18 NA
963 60.29 radiation 1.0 270 > th dose independent rect. 9 1