BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0337600 Os03g0337600|AK070859
(390 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0337600 Similar to Uroporphyrinogen decarboxylase (EC ... 778 0.0
Os01g0622300 Similar to Plastid uroporphyrinogen decarboxyl... 412 e-115
AK110601 409 e-114
Os03g0340001 Uroporphyrinogen decarboxylase (URO-D) family ... 164 9e-41
>Os03g0337600 Similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D)
(UPD) (Fragment)
Length = 390
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/390 (97%), Positives = 381/390 (97%)
Query: 1 MATACPPLSLQPAYLSGRSXXXXXXXXXVRCSAVGEVMAETAAVGTAEEPLLVSAIKGRK 60
MATACPPLSLQPAYLSGRS VRCSAVGEVMAETAAVGTAEEPLLVSAIKGRK
Sbjct: 1 MATACPPLSLQPAYLSGRSARARRPPPAVRCSAVGEVMAETAAVGTAEEPLLVSAIKGRK 60
Query: 61 VERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSD 120
VERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSD
Sbjct: 61 VERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSD 120
Query: 121 ILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPEEWVPYVGQALNILREEVNN 180
ILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPEEWVPYVGQALNILREEVNN
Sbjct: 121 ILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPEEWVPYVGQALNILREEVNN 180
Query: 181 EAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEPEILHNLLQKFTTSMANYIKYQA 240
EAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEPEILHNLLQKFTTSMANYIKYQA
Sbjct: 181 EAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEPEILHNLLQKFTTSMANYIKYQA 240
Query: 241 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETHPELPLILYASGSGGLLERL 300
DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETHPELPLILYASGSGGLLERL
Sbjct: 241 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETHPELPLILYASGSGGLLERL 300
Query: 301 PLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFISKRIFDTVQKAGNSG 360
PLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFISKRIFDTVQKAGNSG
Sbjct: 301 PLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFISKRIFDTVQKAGNSG 360
Query: 361 HVLNLGHGIKVGTPEENVAHFFEVAKGIRY 390
HVLNLGHGIKVGTPEENVAHFFEVAKGIRY
Sbjct: 361 HVLNLGHGIKVGTPEENVAHFFEVAKGIRY 390
>Os01g0622300 Similar to Plastid uroporphyrinogen decarboxylase (Fragment)
Length = 402
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/364 (53%), Positives = 260/364 (71%), Gaps = 6/364 (1%)
Query: 30 RCSAVGEVMAETAAVGTAEEPLLVSAIKGRK-VERPPVWLMRQAGRYMKSYQLLCERHPS 88
R S + + A A + EEPLLV A +G + RPP W+MRQAGRYM YQ L +RHPS
Sbjct: 26 RRSGLPAISASLATASSTEEPLLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPS 85
Query: 89 FRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRT 148
FRERSE +L+VEI+LQPW+ F PDGVILFSDILTPLP + +PFDI KGPVI P+R+
Sbjct: 86 FRERSETTELIVEITLQPWRAFAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRS 145
Query: 149 AAAVNEVREFVPEEW--VPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKN 206
+VRE P ++ + +VG++L ILR E++ +AA+LGFVGAP+T+A+Y VEGG +
Sbjct: 146 E---EQVRELTPIDFEKLRFVGESLKILRTEIDGQAALLGFVGAPWTIATYVVEGGMTNT 202
Query: 207 FSKIKKMAFSEPEILHNLLQKFTTSMANYIKYQADNGAQAVQIFDSWATELSPVDFEEFS 266
++ IK M + P +L LL +++ YI YQ ++GAQ +QIFDSW +L P +E++S
Sbjct: 203 YTNIKSMCHTAPNVLRGLLSHLADAISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQWS 262
Query: 267 LPYLKQIVDSVKETHPELPLILYASGSGGLLERLPLTGVDVVSLDWTVDMAEGRKRLGSN 326
PY+KQIV+ +K P +PL+LY +G+GGLLER+ TGVDV+ LDWTVDMA+GR+RLG+
Sbjct: 263 KPYIKQIVNKIKIECPNVPLVLYINGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLGNK 322
Query: 327 IAVQGNVDPGVLFGSKEFISKRIFDTVQKAGNSGHVLNLGHGIKVGTPEENVAHFFEVAK 386
I+VQGNVDP LF ++ I V+ AG GH+LNLGHG+ V TPEE VAHFF+V +
Sbjct: 323 ISVQGNVDPAFLFSPLPVLTDEIHRVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDVTR 382
Query: 387 GIRY 390
+RY
Sbjct: 383 SLRY 386
>AK110601
Length = 398
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/339 (56%), Positives = 251/339 (74%), Gaps = 2/339 (0%)
Query: 51 LLVSAIKGRKVERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKVF 110
L+V A +G VER P W+MRQAGRY +Y+ L +RHPSFRERSE +L+V+ISLQPW+ F
Sbjct: 55 LMVRAARGETVERAPCWMMRQAGRYQSAYRELAKRHPSFRERSETTELIVDISLQPWRSF 114
Query: 111 KPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPEEWVPYVGQA 170
KPDGVILFSDILTPLPG+ +PF+I KGP+I +P+R+ ++ + + + +VG++
Sbjct: 115 KPDGVILFSDILTPLPGLGVPFEIDDNKGPLIDNPIRSTDQLSRLHPLDLSQ-LQFVGES 173
Query: 171 LNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEPEILHNLLQKFTT 230
L LR+EV N AAVLGFVG+P+TLA+Y +EG SS + IK MA+ P +L LL
Sbjct: 174 LQQLRQEVGNTAAVLGFVGSPWTLATYIIEGASSSLYKTIKAMAYCNPTLLDALLSHLAE 233
Query: 231 SMANYIKYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETHPELPLILYA 290
+MA+YI+YQ D+GAQ VQIFDSW +L P ++++S PYL+++++SVK THP PL LYA
Sbjct: 234 AMADYIRYQIDSGAQCVQIFDSWGGQLPPQQWDKWSGPYLRRMIESVKSTHPSTPLTLYA 293
Query: 291 SGSGGLLERLPLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFISKRIF 350
+GSGGLLERL TG DVV LDWTVDMA+ R+RLG+ AVQGNVDP VLF + I +
Sbjct: 294 NGSGGLLERLGATGADVVGLDWTVDMADARQRLGAK-AVQGNVDPTVLFCGESAIESAVR 352
Query: 351 DTVQKAGNSGHVLNLGHGIKVGTPEENVAHFFEVAKGIR 389
D + KAG GH+LNLGHG+ VGTPEE VAH F ++K I+
Sbjct: 353 DVLAKAGGRGHILNLGHGVLVGTPEEAVAHMFNLSKQIK 391
>Os03g0340001 Uroporphyrinogen decarboxylase (URO-D) family protein
Length = 91
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/90 (93%), Positives = 85/90 (94%), Gaps = 1/90 (1%)
Query: 265 FSLPYLKQIVDSVKETHPELPLILYASGSGGLLERLPLTGVDVVSLDWTVDMAEGRKRLG 324
FSLPYLKQIVDSVKETHPELPLILYASGSGGLLERLPLTGVDVVSL TVDMAEGRKRLG
Sbjct: 1 FSLPYLKQIVDSVKETHPELPLILYASGSGGLLERLPLTGVDVVSLG-TVDMAEGRKRLG 59
Query: 325 SNIAVQGNVDPGVLFGSKEFISKRIFDTVQ 354
SNIAVQGNVDPGVLFGSKEFIS RIF T +
Sbjct: 60 SNIAVQGNVDPGVLFGSKEFISNRIFHTAE 89
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,394,773
Number of extensions: 553972
Number of successful extensions: 1182
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 4
Length of query: 390
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 287
Effective length of database: 11,657,759
Effective search space: 3345776833
Effective search space used: 3345776833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)