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Os03g0337600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0273) R2 : 0.313
β1 : -1.15 (0.1) R2dD : 0.205 R2D : 0.079
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.628 (0.0583) R2dN8 : 0.234 R2N8 : 0.108
σ : 0.513
deviance : 120.32
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.56 0.429 12.6 -0.478 0.458 0.129 2 -1.9 -0.453 21.1 1011 6599 -- --
92.33 0.448 12.6 -0.759 0.444 0.461 1.82 -- -0.487 21 1010 37496 -- --
97.33 0.459 12.6 -0.573 0.457 0.113 -- -1.82 -0.462 20.6 1011 6488 -- --
105.21 0.478 12.6 -0.835 0.444 0.48 -- -- -0.495 20.8 1010 37446 -- --
109.28 0.487 12.6 -0.568 -- 0.11 -- -1.85 -0.461 -- 1011 6527 -- --
95.19 0.457 12.6 -1.08 0.467 -- 1.91 -- -0.624 21.2 -- -- -- --
107.89 0.486 12.7 -1.15 0.469 -- -- -- -0.624 20.7 -- -- -- --
117.62 0.505 12.6 -0.909 -- 0.414 -- -- -0.527 -- 1010 38078 -- --
115.39 0.5 12.6 -- 0.471 0.851 -- -- -0.287 20.7 1014 47520 -- --
120.32 0.513 12.6 -1.15 -- -- -- -- -0.628 -- -- -- -- --
142.45 0.558 12.6 -- 0.473 -- -- -- -0.497 20.5 -- -- -- --
127.61 0.526 12.6 -- -- 0.843 -- -- -0.29 -- 1014 47520 -- --
154.98 0.581 12.6 -- -- -- -- -- -0.501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.84 humidity 80 43200 < th dose dependent rect. 7 1
2 78.14 wind 1 43200 > th dose independent sin 16 NA
3 78.18 wind 1 43200 > th dose independent rect. 13 14
6 78.27 wind 1 43200 < th dose independent rect. 13 14
9 78.49 wind 1 43200 < th dose independent sin 16 NA
13 78.64 wind 1 43200 < th dose dependent rect. 9 2
19 78.90 wind 1 43200 < th dose independent rect. 9 2
33 79.41 wind 1 14400 < th dose dependent rect. 23 1
34 79.43 wind 1 14400 < th dose independent rect. 23 1
40 79.58 wind 1 43200 < th dose dependent rect. 9 15
46 79.76 wind 1 43200 < th dose dependent rect. 11 13
48 79.80 wind 1 43200 < th dose dependent sin 19 NA
54 79.97 wind 1 14400 > th dose independent rect. 23 1
86 80.42 humidity 70 43200 > th dose dependent rect. 21 1
95 80.49 wind 1 43200 > th dose independent rect. 9 2
140 81.01 humidity 90 14400 < th dose dependent rect. 3 1
164 81.43 wind 9 43200 > th dose dependent rect. 19 4
165 81.45 wind 9 43200 > th dose independent rect. 19 2
183 81.62 wind 9 43200 < th dose independent rect. 19 2
187 81.65 wind 3 43200 < th dose independent rect. 16 1
191 81.67 wind 9 43200 > th dose independent rect. 19 4
197 81.74 wind 3 43200 < th dose dependent rect. 15 8
202 81.80 wind 3 43200 > th dose independent rect. 16 1
210 81.90 humidity 60 43200 > th dose dependent rect. 18 6
212 81.93 wind 9 43200 > th dose dependent rect. 17 13
224 82.02 humidity 60 43200 > th dose dependent rect. 17 8
227 82.03 wind 9 43200 < th dose independent rect. 19 4
231 82.07 wind 9 14400 > th dose dependent rect. 13 1
248 82.13 wind 9 14400 < th dose independent rect. 13 1
259 82.17 wind 7 14400 < th dose independent rect. 21 3
260 82.17 wind 3 14400 > th dose dependent rect. 15 1
261 82.17 wind 3 43200 < th dose dependent rect. 17 4
263 82.18 wind 7 14400 > th dose dependent rect. 8 1
270 82.20 wind 7 14400 < th dose dependent rect. 15 1
278 82.24 wind 7 14400 > th dose independent rect. 21 3
298 82.30 wind 9 43200 > th dose dependent rect. 19 9
305 82.31 wind 5 14400 < th dose dependent rect. 11 4
310 82.33 wind 9 43200 < th dose independent rect. 19 9
315 82.34 wind 5 14400 > th dose dependent rect. 21 3
320 82.36 wind 9 43200 > th dose independent rect. 19 9
321 82.38 wind 9 43200 > th dose dependent rect. 17 8
333 82.41 wind 3 14400 > th dose independent rect. 12 2
334 82.41 wind 9 43200 > th dose independent rect. 19 6
338 82.42 wind 3 14400 < th dose independent rect. 12 2
339 82.42 humidity 60 43200 > th dose dependent sin 15 NA
371 82.48 wind 9 43200 < th dose independent rect. 19 6
388 82.51 wind 9 43200 > th dose dependent rect. 19 6
405 82.55 wind 7 14400 > th dose independent rect. 8 1
416 82.57 wind 1 43200 > th dose dependent rect. 23 2
444 82.63 wind 3 43200 < th dose dependent rect. 21 4
454 82.65 humidity 80 43200 > th dose independent sin 15 NA
467 82.67 atmosphere 1000 10 < th dose independent rect. 10 14
470 82.68 humidity 80 43200 > th dose independent rect. 14 14
496 82.73 wind 7 43200 < th dose dependent rect. 23 2
543 82.83 humidity 70 43200 > th dose independent rect. 6 2
551 82.84 humidity 90 43200 < th dose dependent rect. 21 1
558 82.85 wind 1 14400 < th dose independent rect. 17 7
566 82.86 atmosphere 1000 10 < th dose independent rect. 10 10
571 82.87 atmosphere 1000 10 < th dose independent sin 20 NA
572 82.87 radiation 20 4320 < th dose independent rect. 24 7
578 82.88 atmosphere 1000 30 > th dose independent sin 20 NA
610 82.91 wind 9 43200 > th dose independent rect. 17 13
643 82.95 humidity 90 43200 < th dose dependent rect. 17 9
660 82.97 radiation 20 4320 < th dose independent rect. 6 1
671 82.98 radiation 20 4320 < th dose independent rect. 20 11
674 82.98 humidity 90 43200 < th dose dependent rect. 18 5
676 82.99 wind 9 14400 > th dose independent rect. 13 1
712 83.02 humidity 80 43200 > th dose independent rect. 11 22
724 83.03 humidity 80 43200 < th dose independent rect. 11 22
736 83.04 wind 1 14400 > th dose dependent rect. 11 5
785 83.09 radiation 20 4320 < th dose independent rect. 3 4
807 83.11 atmosphere 1000 10 < th dose independent rect. 10 6
818 83.12 wind 7 14400 < th dose independent rect. 8 1
823 83.12 humidity 80 43200 < th dose independent rect. 14 14
827 83.12 humidity 80 43200 > th dose independent rect. 14 22
829 83.12 humidity 90 43200 < th dose dependent rect. 13 16
845 83.14 humidity 90 43200 < th dose dependent rect. 14 14
880 83.17 humidity 80 43200 > th dose independent rect. 17 22
890 83.18 temperature 20 43200 < th dose independent rect. 21 1
914 83.19 humidity 90 43200 < th dose dependent sin 15 NA
933 83.21 humidity 80 43200 < th dose independent sin 15 NA
976 83.24 humidity 80 43200 < th dose independent rect. 14 23
984 83.25 humidity 80 43200 < th dose independent rect. 17 22