BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0337600 Os03g0337600|AK070859
         (390 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40490.1  | chr2:16912961-16914988 FORWARD LENGTH=395          607   e-174
AT3G14930.1  | chr3:5020675-5022577 FORWARD LENGTH=419            405   e-113

>AT2G40490.1 | chr2:16912961-16914988 FORWARD LENGTH=395
          Length = 394

 Score =  607 bits (1564), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 290/362 (80%), Positives = 323/362 (89%), Gaps = 1/362 (0%)

Query: 29  VRCSAVGEVMAETAAVGTAEEPLLVSAIKGRKVERPPVWLMRQAGRYMKSYQLLCERHPS 88
           VRCS  G  + E     T+E PLL+ A+KG  V+RPPVWLMRQAGRYMKSYQ LCE++PS
Sbjct: 34  VRCSVEGTTVTERKVSATSE-PLLLRAVKGEVVDRPPVWLMRQAGRYMKSYQTLCEKYPS 92

Query: 89  FRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRT 148
           FR+RSEN DLVVEISLQPWKVFKPDGVILFSDILTPL GMNIPFDIVKGKGP+IF+P ++
Sbjct: 93  FRDRSENADLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIFNPPQS 152

Query: 149 AAAVNEVREFVPEEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFS 208
           AA V +VREFVPEE VPYVG+AL  LR EVNNEAAVLGFVGAPFTL+SY +EGGSSKNF+
Sbjct: 153 AADVAQVREFVPEESVPYVGEALRRLRNEVNNEAAVLGFVGAPFTLSSYVIEGGSSKNFT 212

Query: 209 KIKKMAFSEPEILHNLLQKFTTSMANYIKYQADNGAQAVQIFDSWATELSPVDFEEFSLP 268
           +IK++AFS+P++LH LLQKFTTSM  YI+YQAD+GAQAVQIFDSWATELSPVDFEEFSLP
Sbjct: 213 QIKRLAFSQPKVLHALLQKFTTSMITYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLP 272

Query: 269 YLKQIVDSVKETHPELPLILYASGSGGLLERLPLTGVDVVSLDWTVDMAEGRKRLGSNIA 328
           YLKQIV++VK+THP LPLILYASGSGGLLERL  TGVDVVSLDWTVDMAEGR RLG +IA
Sbjct: 273 YLKQIVEAVKQTHPNLPLILYASGSGGLLERLARTGVDVVSLDWTVDMAEGRDRLGRDIA 332

Query: 329 VQGNVDPGVLFGSKEFISKRIFDTVQKAGNSGHVLNLGHGIKVGTPEENVAHFFEVAKGI 388
           VQGNVDPGVLFGSKEFI+ RI DTV+KAG   H+LNLGHGIKVGTPEENVAHFFEVA+ I
Sbjct: 333 VQGNVDPGVLFGSKEFITSRIHDTVKKAGRDKHILNLGHGIKVGTPEENVAHFFEVAQEI 392

Query: 389 RY 390
           RY
Sbjct: 393 RY 394



>AT3G14930.1 | chr3:5020675-5022577 FORWARD LENGTH=419
          Length = 418

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/349 (53%), Positives = 254/349 (72%), Gaps = 1/349 (0%)

Query: 42  AAVGTAEEPLLVSAIKGRKVERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVE 101
           A   ++ +PLLV A KG+ + RPP W+MRQAGRYM  YQ L ++HPSFRERSEN DL+VE
Sbjct: 52  ACSSSSSDPLLVKAAKGQAISRPPAWMMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVE 111

Query: 102 ISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPE 161
           ISLQPW+ F+PDGVI+FSDILTPLP   +PFDI + KGPVI  P+RT   +  +   +  
Sbjct: 112 ISLQPWQAFRPDGVIIFSDILTPLPAFGVPFDIEEVKGPVIQSPIRTEEDMKRLHP-IDF 170

Query: 162 EWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEPEIL 221
           E + +VG +L ILR EV   AAVLGFVGAP+T+A+Y VEGG+++ ++ IK M  + P++L
Sbjct: 171 EKLQFVGDSLKILRREVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTVIKNMCHTAPDVL 230

Query: 222 HNLLQKFTTSMANYIKYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETH 281
             LL   T ++  Y+ YQ ++GA  +QIFDSW  +L+P  +E +S PY+++I+ +VK+  
Sbjct: 231 RALLSHLTKAITEYVVYQVEHGAHCIQIFDSWGGQLTPEMWERWSKPYIEEIIHAVKKRC 290

Query: 282 PELPLILYASGSGGLLERLPLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGS 341
           P+ P++ Y +G+GGLLER+  TG DV+ LDWTVDMA+GR+RLGS ++VQGNVDP  LF  
Sbjct: 291 PDTPIVFYINGNGGLLERMKGTGADVIGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSP 350

Query: 342 KEFISKRIFDTVQKAGNSGHVLNLGHGIKVGTPEENVAHFFEVAKGIRY 390
              +++ I   V+ AG  GH+LNLGHG+ VGTPEE VAHFFE A+ + Y
Sbjct: 351 LPALTEEIERVVKCAGPKGHILNLGHGVLVGTPEEAVAHFFETARNLDY 399



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,417,277
Number of extensions: 353406
Number of successful extensions: 838
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 290
Effective length of database: 8,364,969
Effective search space: 2425841010
Effective search space used: 2425841010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)