Os01g0622300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastid uroporphyrinogen decarboxylase (Fragment).
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Os01g0622300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastid uroporphyrinogen decarboxylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.29 | 0.429 | 10.2 | 0.0417 | 1.35 | 1.21 | -1.06 | -1.56 | -0.598 | 19.6 | 23.54 | 251 | -- | -- |
| 84.41 | 0.428 | 10.1 | 0.286 | 1.35 | 1.08 | -1.33 | -- | -0.531 | 19.5 | 23.61 | 256 | -- | -- |
| 86.27 | 0.433 | 10.2 | 0.0287 | 1.38 | 1.2 | -- | -1.75 | -0.612 | 19.6 | 23.35 | 235 | -- | -- |
| 88.17 | 0.437 | 10.1 | 0.324 | 1.43 | 1.03 | -- | -- | -0.514 | 19.6 | 23.73 | 184 | -- | -- |
| 147.51 | 0.566 | 10.2 | -0.58 | -- | 2.36 | -- | -4.77 | -0.816 | -- | 24.23 | 432 | -- | -- |
| 103.86 | 0.478 | 10.1 | 0.503 | 1.76 | -- | -0.944 | -- | -0.385 | 18.9 | -- | -- | -- | -- |
| 106.15 | 0.482 | 10.1 | 0.519 | 1.76 | -- | -- | -- | -0.387 | 18.9 | -- | -- | -- | -- |
| 156.34 | 0.582 | 10.1 | 0.133 | -- | 1.99 | -- | -- | -0.614 | -- | 24.3 | 426 | -- | -- |
| 90.88 | 0.444 | 10.1 | -- | 1.42 | 1.06 | -- | -- | -0.544 | 19.6 | 23.5 | 193 | -- | -- |
| 268.33 | 0.765 | 10.1 | 0.482 | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
| 113.26 | 0.498 | 10.1 | -- | 1.75 | -- | -- | -- | -0.445 | 18.9 | -- | -- | -- | -- |
| 156.83 | 0.583 | 10.1 | -- | -- | 1.99 | -- | -- | -0.629 | -- | 24.3 | 429 | -- | -- |
| 274.44 | 0.773 | 10.1 | -- | -- | -- | -- | -- | -0.474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 10 | 75.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 36 | 77.47 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 82 | 78.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 104 | 79.56 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 127 | 80.13 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 143 | 80.37 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 168 | 80.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 173 | 80.71 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 180 | 80.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 195 | 80.83 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 291 | 81.74 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 301 | 81.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 390 | 82.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 433 | 82.58 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 14 |
| 444 | 82.68 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 572 | 83.25 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 588 | 83.32 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 597 | 83.36 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 7 |
| 644 | 83.48 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 664 | 83.55 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 809 | 84.04 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 865 | 84.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 869 | 84.17 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 870 | 84.17 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 871 | 84.17 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 895 | 84.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 967 | 84.38 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 983 | 84.42 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 1 |