BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0622300 Os01g0622300|AK106203
         (402 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14930.1  | chr3:5020675-5022577 FORWARD LENGTH=419            561   e-160
AT2G40490.1  | chr2:16912961-16914988 FORWARD LENGTH=395          400   e-112

>AT3G14930.1 | chr3:5020675-5022577 FORWARD LENGTH=419
          Length = 418

 Score =  561 bits (1446), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 265/355 (74%), Positives = 305/355 (85%), Gaps = 2/355 (0%)

Query: 47  LLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRA 106
           LLV+AA+G+  + RPPAWMMRQAGRYMA YQ LAK+HPSFRERSE T+LIVEI+LQPW+A
Sbjct: 61  LLVKAAKGQ-AISRPPAWMMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQA 119

Query: 107 FAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEEQVRELTPIDFEKLRFVGES 166
           F PDGVI+FSDILTPLPA GVPFDI + KGPVIQSP+R+EE ++ L PIDFEKL+FVG+S
Sbjct: 120 FRPDGVIIFSDILTPLPAFGVPFDIEEVKGPVIQSPIRTEEDMKRLHPIDFEKLQFVGDS 179

Query: 167 LKILRTEIDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIKSMCHTAPNVLRGLLSHLAD 226
           LKILR E+   AA+LGFVGAPWTIATY+VEGG T TYT IK+MCHTAP+VLR LLSHL  
Sbjct: 180 LKILRREVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTVIKNMCHTAPDVLRALLSHLTK 239

Query: 227 AISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPNVPLVLYI 286
           AI+EY++YQV  GA CIQIFDSWGGQL P +WE+WSKPYI++I++ +K  CP+ P+V YI
Sbjct: 240 AITEYVVYQVEHGAHCIQIFDSWGGQLTPEMWERWSKPYIEEIIHAVKKRCPDTPIVFYI 299

Query: 287 NGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLFSPLPVLTDEIH 346
           NGNGGLLERM  TG DVIGLDWTVDMADGRRRLG+++SVQGNVDPA+LFSPLP LT+EI 
Sbjct: 300 NGNGGLLERMKGTGADVIGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIE 359

Query: 347 RVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDVTRSLRYDTLFQGCV-TEVLEP 400
           RVVK AGPKGHILNLGHGVLV TPEEAVAHFF+  R+L Y TLFQ  V  E  EP
Sbjct: 360 RVVKCAGPKGHILNLGHGVLVGTPEEAVAHFFETARNLDYQTLFQNHVPAEKAEP 414



>AT2G40490.1 | chr2:16912961-16914988 FORWARD LENGTH=395
          Length = 394

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/343 (55%), Positives = 248/343 (72%), Gaps = 6/343 (1%)

Query: 47  LLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRA 106
           LL+RA +GE  + RPP W+MRQAGRYM  YQ L +++PSFR+RSE  +L+VEI+LQPW+ 
Sbjct: 55  LLLRAVKGE-VVDRPPVWLMRQAGRYMKSYQTLCEKYPSFRDRSENADLVVEISLQPWKV 113

Query: 107 FAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEE---QVRELTPIDFEKLRFV 163
           F PDGVILFSDILTPL  + +PFDI   KGP+I +P +S     QVRE  P   E + +V
Sbjct: 114 FKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIFNPPQSAADVAQVREFVPE--ESVPYV 171

Query: 164 GESLKILRTEIDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIKSMCHTAPNVLRGLLSH 223
           GE+L+ LR E++ +AA+LGFVGAP+T+++YV+EGG +  +T IK +  + P VL  LL  
Sbjct: 172 GEALRRLRNEVNNEAAVLGFVGAPFTLSSYVIEGGSSKNFTQIKRLAFSQPKVLHALLQK 231

Query: 224 LADAISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPNVPLV 283
              ++  YI YQ +SGAQ +QIFDSW  +L P  +E++S PY+KQIV  +K   PN+PL+
Sbjct: 232 FTTSMITYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVEAVKQTHPNLPLI 291

Query: 284 LYINGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLFSPLPVLTD 343
           LY +G+GGLLER+  TGVDV+ LDWTVDMA+GR RLG  I+VQGNVDP  LF     +T 
Sbjct: 292 LYASGSGGLLERLARTGVDVVSLDWTVDMAEGRDRLGRDIAVQGNVDPGVLFGSKEFITS 351

Query: 344 EIHRVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDVTRSLRY 386
            IH  VK AG   HILNLGHG+ V TPEE VAHFF+V + +RY
Sbjct: 352 RIHDTVKKAGRDKHILNLGHGIKVGTPEENVAHFFEVAQEIRY 394



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,053,278
Number of extensions: 349467
Number of successful extensions: 647
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)