BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0622300 Os01g0622300|AK106203
(402 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0622300 Similar to Plastid uroporphyrinogen decarboxyl... 738 0.0
AK110601 456 e-128
Os03g0337600 Similar to Uroporphyrinogen decarboxylase (EC ... 399 e-111
Os03g0340001 Uroporphyrinogen decarboxylase (URO-D) family ... 98 1e-20
>Os01g0622300 Similar to Plastid uroporphyrinogen decarboxylase (Fragment)
Length = 402
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 47 LLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRA 106
LLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRA
Sbjct: 47 LLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRA 106
Query: 107 FAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEEQVRELTPIDFEKLRFVGES 166
FAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEEQVRELTPIDFEKLRFVGES
Sbjct: 107 FAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEEQVRELTPIDFEKLRFVGES 166
Query: 167 LKILRTEIDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIKSMCHTAPNVLRGLLSHLAD 226
LKILRTEIDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIKSMCHTAPNVLRGLLSHLAD
Sbjct: 167 LKILRTEIDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIKSMCHTAPNVLRGLLSHLAD 226
Query: 227 AISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPNVPLVLYI 286
AISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPNVPLVLYI
Sbjct: 227 AISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPNVPLVLYI 286
Query: 287 NGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLFSPLPVLTDEIH 346
NGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLFSPLPVLTDEIH
Sbjct: 287 NGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLFSPLPVLTDEIH 346
Query: 347 RVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDVTRSLRYDTLFQGCVTEVLEPVA 402
RVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDVTRSLRYDTLFQGCVTEVLEPVA
Sbjct: 347 RVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDVTRSLRYDTLFQGCVTEVLEPVA 402
>AK110601
Length = 398
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 208/339 (61%), Positives = 269/339 (79%), Gaps = 2/339 (0%)
Query: 47 LLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRA 106
L+VRAARGE + R P WMMRQAGRY + Y+ LAKRHPSFRERSETTELIV+I+LQPWR+
Sbjct: 55 LMVRAARGET-VERAPCWMMRQAGRYQSAYRELAKRHPSFRERSETTELIVDISLQPWRS 113
Query: 107 FAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEEQVRELTPIDFEKLRFVGES 166
F PDGVILFSDILTPLP +GVPF+I D+KGP+I +P+RS +Q+ L P+D +L+FVGES
Sbjct: 114 FKPDGVILFSDILTPLPGLGVPFEIDDNKGPLIDNPIRSTDQLSRLHPLDLSQLQFVGES 173
Query: 167 LKILRTEIDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIKSMCHTAPNVLRGLLSHLAD 226
L+ LR E+ AA+LGFVG+PWT+ATY++EG ++ Y IK+M + P +L LLSHLA+
Sbjct: 174 LQQLRQEVGNTAAVLGFVGSPWTLATYIIEGASSSLYKTIKAMAYCNPTLLDALLSHLAE 233
Query: 227 AISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPNVPLVLYI 286
A+++YI YQ++SGAQC+QIFDSWGGQLPP W++WS PY+++++ +K P+ PL LY
Sbjct: 234 AMADYIRYQIDSGAQCVQIFDSWGGQLPPQQWDKWSGPYLRRMIESVKSTHPSTPLTLYA 293
Query: 287 NGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLFSPLPVLTDEIH 346
NG+GGLLER+ TG DV+GLDWTVDMAD R+RLG K +VQGNVDP LF + +
Sbjct: 294 NGSGGLLERLGATGADVVGLDWTVDMADARQRLGAK-AVQGNVDPTVLFCGESAIESAVR 352
Query: 347 RVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDVTRSLR 385
V+ AG +GHILNLGHGVLV TPEEAVAH F++++ ++
Sbjct: 353 DVLAKAGGRGHILNLGHGVLVGTPEEAVAHMFNLSKQIK 391
>Os03g0337600 Similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D)
(UPD) (Fragment)
Length = 390
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/343 (54%), Positives = 250/343 (72%), Gaps = 6/343 (1%)
Query: 47 LLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRA 106
LLV A +G + RPP W+MRQAGRYM YQ L +RHPSFRERSE +L+VEI+LQPW+
Sbjct: 51 LLVSAIKGRK-VERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKV 109
Query: 107 FAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSE---EQVRELTPIDFEKLRFV 163
F PDGVILFSDILTPLP + +PFDI KGPVI P+R+ +VRE P ++ + +V
Sbjct: 110 FKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVPEEW--VPYV 167
Query: 164 GESLKILRTEIDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIKSMCHTAPNVLRGLLSH 223
G++L ILR E++ +AA+LGFVGAP+T+A+Y VEGG + ++ IK M + P +L LL
Sbjct: 168 GQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEPEILHNLLQK 227
Query: 224 LADAISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPNVPLV 283
+++ YI YQ ++GAQ +QIFDSW +L P +E++S PY+KQIV+ +K P +PL+
Sbjct: 228 FTTSMANYIKYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETHPELPLI 287
Query: 284 LYINGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLFSPLPVLTD 343
LY +G+GGLLER+ TGVDV+ LDWTVDMA+GR+RLG+ I+VQGNVDP LF ++
Sbjct: 288 LYASGSGGLLERLPLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFISK 347
Query: 344 EIHRVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDVTRSLRY 386
I V+ AG GH+LNLGHG+ V TPEE VAHFF+V + +RY
Sbjct: 348 RIFDTVQKAGNSGHVLNLGHGIKVGTPEENVAHFFEVAKGIRY 390
>Os03g0340001 Uroporphyrinogen decarboxylase (URO-D) family protein
Length = 91
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Query: 261 WSKPYIKQIVNKIKIECPNVPLVLYINGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLG 320
+S PY+KQIV+ +K P +PL+LY +G+GGLLER+ TGVDV+ L TVDMA+GR+RLG
Sbjct: 1 FSLPYLKQIVDSVKETHPELPLILYASGSGGLLERLPLTGVDVVSLG-TVDMAEGRKRLG 59
Query: 321 NKISVQGNVDPAFLFSPLPVLTDEIHRVVKS 351
+ I+VQGNVDP LF +++ I +S
Sbjct: 60 SNIAVQGNVDPGVLFGSKEFISNRIFHTAES 90
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,166,001
Number of extensions: 577559
Number of successful extensions: 1235
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1232
Number of HSP's successfully gapped: 4
Length of query: 402
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 299
Effective length of database: 11,657,759
Effective search space: 3485669941
Effective search space used: 3485669941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)