BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0336100 Os03g0336100|AK105307
(337 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0336100 11-S plant seed storage protein family protein 567 e-162
Os03g0197300 Cupin, RmlC-type domain containing protein 112 3e-25
>Os03g0336100 11-S plant seed storage protein family protein
Length = 337
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/337 (83%), Positives = 283/337 (83%)
Query: 1 MHKDELVEKNLKMGDVLHIDAGSTFYMVNSGKGQRLKIICSIDASDNIGFGPYQAFFLXX 60
MHKDELVEKNLKMGDVLHIDAGSTFYMVNSGKGQRLKIICSIDASDNIGFGPYQAFFL
Sbjct: 1 MHKDELVEKNLKMGDVLHIDAGSTFYMVNSGKGQRLKIICSIDASDNIGFGPYQAFFLGG 60
Query: 61 XXXXXXXQWRPVGRGXXXXXXXXXLVVDEASSTWSWTKXXXXXXXXXXXXAPSNSVAAQP 120
QWRPVGRG LVVDEASSTWSWTK APSNSVAAQP
Sbjct: 61 GGGAAAGQWRPVGRGEEEEEEEEELVVDEASSTWSWTKLVGRLLGVVGGGAPSNSVAAQP 120
Query: 121 KKKKDKTVRAPEPYNLYEQGTGFRNAYGSSVAVDKHDYEPLGHSDIGVYLVNLTAGSMMA 180
KKKKDKTVRAPEPYNLYEQGTGFRNAYGSSVAVDKHDYEPLGHSDIGVYLVNLTAGSMMA
Sbjct: 121 KKKKDKTVRAPEPYNLYEQGTGFRNAYGSSVAVDKHDYEPLGHSDIGVYLVNLTAGSMMA 180
Query: 181 PHVNPRATEYGVVLSGTGCIEVVFPNGSKAMSATVRAGDVFYIPRYFPFCQVASRGGPFV 240
PHVNPRATEYGVVLSGTGCIEVVFPNGSKAMSATVRAGDVFYIPRYFPFCQVASRGGPFV
Sbjct: 181 PHVNPRATEYGVVLSGTGCIEVVFPNGSKAMSATVRAGDVFYIPRYFPFCQVASRGGPFV 240
Query: 241 FFGFTTSARRNHPQFLVGGSSVLRALLGTELAAAFGVPEKAMRKLVLAQNEAVILPSXXX 300
FFGFTTSARRNHPQFLVGGSSVLRALLGTELAAAFGVPEKAMRKLVLAQNEAVILPS
Sbjct: 241 FFGFTTSARRNHPQFLVGGSSVLRALLGTELAAAFGVPEKAMRKLVLAQNEAVILPSWPE 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXAAKQRKPWVIEQVPAK 337
AAKQRKPWVIEQVPAK
Sbjct: 301 KKKKKKWEEEPEDERWEEKKKAAKQRKPWVIEQVPAK 337
>Os03g0197300 Cupin, RmlC-type domain containing protein
Length = 601
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 92/190 (48%), Gaps = 28/190 (14%)
Query: 134 YNLYEQGTGFRNAYGSSVAVDKHDYEPLGHSDIGVYLVNLTAGSMMAPHVNPRATEYGVV 193
+N Y N YG S ++ D E L S+IG+++VNLT G+MM PH NPRATE VV
Sbjct: 266 FNFYSGKPDVENCYGWSRSMTNRDLETLRGSNIGMFMVNLTTGAMMGPHWNPRATEIAVV 325
Query: 194 LSGTGCIEVVFPNGSKAMSAT---------------------------VRAGDVFYIPRY 226
G G +++V P+ S V+ GDV +PR+
Sbjct: 326 TQGAGMVQIVCPSIPSGESKKHHHDEEGGRGDHGHGGGGVRCKNSLFRVKEGDVLVVPRF 385
Query: 227 FPFCQVASRGGPFVFFGFTTSARRNHPQFLVGGSSVLRALLGTELAAAFGVPEKA-MRKL 285
P Q++ FVF GF+T NHPQFL G SVL+ + LA + G + +L
Sbjct: 386 HPMAQISFNNDSFVFVGFSTDMGHNHPQFLAGRHSVLQVIGKEILARSLGQDNSTNVGRL 445
Query: 286 VLAQNEAVIL 295
+ +Q E+ I+
Sbjct: 446 LSSQRESTIM 455
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,082,689
Number of extensions: 392816
Number of successful extensions: 719
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 236
Effective length of database: 11,762,187
Effective search space: 2775876132
Effective search space used: 2775876132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)