Os03g0197300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupin, RmlC-type domain containing protein.
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Os03g0197300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupin, RmlC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 591.55 | 1.14 | 5.45 | 5.94 | 2.21 | 2.3 | 3.42 | 2.56 | 2.26 | 9.17 | 22.1 | 1479 | -- | -- |
| 605.85 | 1.15 | 5.37 | 6.74 | 2.21 | 2.24 | 3.45 | -- | 2.46 | 9.18 | 22.2 | 1502 | -- | -- |
| 631.46 | 1.17 | 5.46 | 5.93 | 2.18 | 2.22 | -- | 2.8 | 2.24 | 9.01 | 22.1 | 1380 | -- | -- |
| 647.41 | 1.19 | 5.36 | 6.86 | 2.2 | 2.22 | -- | -- | 2.46 | 9.11 | 22.2 | 1501 | -- | -- |
| 865.9 | 1.37 | 5.51 | 6.1 | -- | 2.41 | -- | 2.6 | 2.33 | -- | 22.27 | 2264 | -- | -- |
| 786.11 | 1.31 | 5.53 | 5.92 | 2.21 | -- | 3.33 | -- | 1.73 | 9.29 | -- | -- | -- | -- |
| 825.78 | 1.35 | 5.53 | 6.04 | 2.2 | -- | -- | -- | 1.73 | 9.24 | -- | -- | -- | -- |
| 736.23 | 1.26 | 5.39 | 6.74 | -- | 2.77 | -- | -- | 2.69 | -- | 25.2 | 739 | -- | -- |
| 1738 | 1.95 | 5.62 | -- | 2.43 | 0.898 | -- | -- | 1.29 | 9.43 | 22.2 | 1501 | -- | -- |
| 1105.99 | 1.55 | 5.59 | 6.03 | -- | -- | -- | -- | 1.74 | -- | -- | -- | -- | -- |
| 1785.79 | 1.98 | 5.68 | -- | 2.2 | -- | -- | -- | 1.06 | 9.03 | -- | -- | -- | -- |
| 1923.07 | 2.04 | 5.61 | -- | -- | 1.71 | -- | -- | 1.63 | -- | 25.3 | 723 | -- | -- |
| 2064.04 | 2.12 | 5.74 | -- | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 557.97 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 2 | 562.21 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 3 | 563.15 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 5 | 564.06 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 7 | 565.39 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 11 | 566.95 | wind | 7.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 14 | 567.87 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 20 | 569.07 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 21 | 569.11 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 23 | 569.39 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 25 | 569.83 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 26 | 569.84 | wind | 7.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 31 | 570.94 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 38 | 572.19 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 62 | 576.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 75 | 578.24 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 76 | 578.55 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 83 | 579.08 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 85 | 579.20 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 86 | 579.20 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 103 | 580.53 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 111 | 581.01 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 142 | 582.80 | wind | 5.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 145 | 582.85 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 148 | 583.00 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 150 | 583.14 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 156 | 583.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 160 | 583.51 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 173 | 583.68 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 206 | 584.29 | wind | 7.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 243 | 584.90 | wind | 7.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 268 | 585.44 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 356 | 586.91 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 422 | 588.48 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 425 | 588.57 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 444 | 588.89 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 487 | 589.52 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 497 | 589.66 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 499 | 589.70 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 580 | 591.04 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 692 | 592.78 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 793 | 594.44 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 803 | 594.63 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 830 | 594.98 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 972 | 596.47 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 993 | 596.69 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 10 | 21 |