BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0197300 Os03g0197300|AK102651
         (601 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0197300  Cupin, RmlC-type domain containing protein          754   0.0  
Os03g0336100  11-S plant seed storage protein family protein      112   8e-25

>Os03g0197300 Cupin, RmlC-type domain containing protein
          Length = 601

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/461 (81%), Positives = 374/461 (81%)

Query: 1   MAVAAATVRWXXXXXXXXXXXXXXREKWWHXXXXXXXXXXHLVQKEWRRVVAASXXXXXX 60
           MAVAAATVRW              REKWWH          HLVQKEWRRVVAAS      
Sbjct: 1   MAVAAATVRWLVLLLAVSAAATASREKWWHGAGGEASGGGHLVQKEWRRVVAASDAGLVT 60

Query: 61  XXXXXXXXXXXYRLHFITMSPGTLFLPVQLHADMVFYVHSGRGKVTYIEEGDSESSSLQV 120
                      YRLHFITMSPGTLFLPVQLHADMVFYVHSGRGKVTYIEEGDSESSSLQV
Sbjct: 61  AVDVADAAGTAYRLHFITMSPGTLFLPVQLHADMVFYVHSGRGKVTYIEEGDSESSSLQV 120

Query: 121 ERGDVYNFDQGTILYIQSNACGTRERLQIYAIFTSDSINADDPRHPTSEVYSFVSDLLKG 180
           ERGDVYNFDQGTILYIQSNACGTRERLQIYAIFTSDSINADDPRHPTSEVYSFVSDLLKG
Sbjct: 121 ERGDVYNFDQGTILYIQSNACGTRERLQIYAIFTSDSINADDPRHPTSEVYSFVSDLLKG 180

Query: 181 FEVEVLRPGFGVPREVVESIKSTKTPPAIIPYNPXXXXXXXSSNWTEEITDALWGVRDPH 240
           FEVEVLRPGFGVPREVVESIKSTKTPPAIIPYNP       SSNWTEEITDALWGVRDPH
Sbjct: 181 FEVEVLRPGFGVPREVVESIKSTKTPPAIIPYNPEEEDEDDSSNWTEEITDALWGVRDPH 240

Query: 241 FLNXXXXXXXXXXXXXXXXXXXXXAFNFYSGKPDVENCYGWSRSMTNRDLETLRGSNIGM 300
           FLN                     AFNFYSGKPDVENCYGWSRSMTNRDLETLRGSNIGM
Sbjct: 241 FLNKKKKDKQKDKHKGKDKKSKSKAFNFYSGKPDVENCYGWSRSMTNRDLETLRGSNIGM 300

Query: 301 FMVNLTTGAMMGPHWNPRATEIAVVTQGAGMVQIVCPSIPSGESKKXXXXXXXXXXXXXX 360
           FMVNLTTGAMMGPHWNPRATEIAVVTQGAGMVQIVCPSIPSGESKK              
Sbjct: 301 FMVNLTTGAMMGPHWNPRATEIAVVTQGAGMVQIVCPSIPSGESKKHHHDEEGGRGDHGH 360

Query: 361 XXXXVRCKNSLFRVKEGDVLVVPRFHPMAQISFNNDSFVFVGFSTDMGHNHPQFLAGRHS 420
               VRCKNSLFRVKEGDVLVVPRFHPMAQISFNNDSFVFVGFSTDMGHNHPQFLAGRHS
Sbjct: 361 GGGGVRCKNSLFRVKEGDVLVVPRFHPMAQISFNNDSFVFVGFSTDMGHNHPQFLAGRHS 420

Query: 421 VLQVIGKEILARSLGQDNSTNVGRLLSSQRESTIMACTSCA 461
           VLQVIGKEILARSLGQDNSTNVGRLLSSQRESTIMACTSCA
Sbjct: 421 VLQVIGKEILARSLGQDNSTNVGRLLSSQRESTIMACTSCA 461



>Os03g0336100 11-S plant seed storage protein family protein
          Length = 337

 Score =  112 bits (280), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 92/190 (48%), Gaps = 28/190 (14%)

Query: 266 FNFYSGKPDVENCYGWSRSMTNRDLETLRGSNIGMFMVNLTTGAMMGPHWNPRATEIAVV 325
           +N Y       N YG S ++   D E L  S+IG+++VNLT G+MM PH NPRATE  VV
Sbjct: 134 YNLYEQGTGFRNAYGSSVAVDKHDYEPLGHSDIGVYLVNLTAGSMMAPHVNPRATEYGVV 193

Query: 326 TQGAGMVQIVCPSIPSGESKKXXXXXXXXXXXXXXXXXXVRCKNSLFRVKEGDVLVVPRF 385
             G G +++V P+     S                             V+ GDV  +PR+
Sbjct: 194 LSGTGCIEVVFPNGSKAMSAT---------------------------VRAGDVFYIPRY 226

Query: 386 HPMAQISFNNDSFVFVGFSTDMGHNHPQFLAGRHSVLQVIGKEILARSLGQDNSTNVGRL 445
            P  Q++     FVF GF+T    NHPQFL G  SVL+ +    LA + G      + +L
Sbjct: 227 FPFCQVASRGGPFVFFGFTTSARRNHPQFLVGGSSVLRALLGTELAAAFGVPEKA-MRKL 285

Query: 446 LSSQRESTIM 455
           + +Q E+ I+
Sbjct: 286 VLAQNEAVIL 295



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,566,235
Number of extensions: 448573
Number of successful extensions: 859
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 2
Length of query: 601
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 494
Effective length of database: 11,448,903
Effective search space: 5655758082
Effective search space used: 5655758082
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)