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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0336100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 11-S plant seed storage protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.68 (0.0368) R2 : 0.672
β1 : 2.83 (0.145) R2dD : 0.349 R2D : 0.224
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.16 (0.16) R2dE : 0.186 R2E : 0.0919
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.963 (0.0859) R2dN8 : 0.154 R2N8 : 0.305
σ : 0.668
deviance : 205.81
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.44
memory length : 2218
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.79 0.659 5.68 2.72 0.249 2.24 -1.51 -0.627 -1.01 12.7 25.01 363 -- --
197.29 0.654 5.69 2.63 0.245 2.31 -1.49 -- -1.03 12.6 24.84 362 -- --
205.38 0.667 5.68 2.76 0.00434 2.12 -- -1.19 -0.997 1.88 25.1 605 -- --
205.78 0.668 5.68 2.8 0.0326 2.13 -- -- -0.957 1.82 24.76 2231 -- --
205.33 0.667 5.67 2.81 -- 2.13 -- -1.28 -0.987 -- 25.14 605 -- --
274.9 0.777 5.8 2.04 0.235 -- -1.5 -- -1.49 10.7 -- -- -- --
283.58 0.789 5.8 1.97 0.274 -- -- -- -1.5 9.12 -- -- -- --
205.81 0.668 5.68 2.83 -- 2.16 -- -- -0.963 -- 24.44 2218 -- --
366.53 0.897 5.8 -- 0.407 1.1 -- -- -1.53 10.6 25.1 1834 -- --
287.91 0.793 5.8 1.97 -- -- -- -- -1.5 -- -- -- -- --
386.38 0.919 5.85 -- 0.278 -- -- -- -1.72 8.59 -- -- -- --
363.17 0.888 5.8 -- -- 1.25 -- -- -1.49 -- 25.6 428 -- --
390.72 0.923 5.85 -- -- -- -- -- -1.72 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.56 radiation 1.0 43200 > th dose dependent rect. 18 1
11 189.02 radiation 10.0 4320 < th dose independent rect. 16 15
12 189.37 wind 9.0 43200 > th dose dependent rect. 18 13
13 189.42 radiation 10.0 43200 < th dose dependent rect. 18 2
14 189.43 radiation 40.0 43200 < th dose dependent rect. 18 11
20 189.55 radiation 10.0 43200 < th dose dependent rect. 18 4
26 189.63 radiation 10.0 43200 < th dose dependent rect. 18 7
57 190.40 wind 9.0 43200 > th dose independent rect. 18 13
60 190.75 wind 9.0 43200 > th dose dependent rect. 18 7
67 191.25 wind 9.0 43200 < th dose independent rect. 18 13
71 191.54 wind 9.0 43200 > th dose independent rect. 18 7
75 191.71 wind 9.0 43200 > th dose independent rect. 18 9
97 192.52 wind 9.0 43200 < th dose independent rect. 18 6
99 192.54 wind 9.0 43200 < th dose independent rect. 18 9
103 192.75 temperature 20.0 1440 < th dose independent rect. 5 1
104 192.85 radiation 10.0 4320 > th dose dependent rect. 16 16
110 193.64 radiation 30.0 4320 < th dose independent rect. 16 16
117 193.95 radiation 1.0 43200 < th dose independent rect. 18 11
123 194.34 radiation 1.0 14400 < th dose dependent rect. 3 5
134 194.63 radiation 1.0 14400 < th dose dependent rect. 21 11
137 194.66 radiation 1.0 14400 < th dose dependent rect. 19 13
140 194.69 radiation 10.0 14400 < th dose independent rect. 17 3
144 194.77 radiation 10.0 14400 < th dose independent rect. 17 5
147 194.81 radiation 10.0 14400 < th dose independent rect. 17 8
168 194.95 radiation 1.0 14400 < th dose dependent sin 9 NA
174 195.07 precipitation 0.1 43200 < th dose independent rect. 20 2
175 195.07 precipitation 0.1 43200 < th dose dependent rect. 20 2
182 195.10 humidity 60.0 43200 < th dose dependent rect. 8 1
185 195.13 precipitation 0.1 43200 > th dose independent rect. 20 2
190 195.15 radiation 1.0 14400 < th dose dependent rect. 17 18
209 195.35 humidity 60.0 43200 < th dose independent rect. 8 1
211 195.37 radiation 10.0 4320 < th dose independent rect. 5 2
227 195.53 humidity 90.0 43200 > th dose independent rect. 6 1
230 195.59 humidity 80.0 43200 > th dose independent rect. 18 1
231 195.59 radiation 30.0 14400 > th dose independent rect. 7 1
252 195.64 radiation 10.0 4320 < th dose independent rect. 2 5
266 195.78 radiation 10.0 4320 < th dose independent rect. 19 12
272 195.86 wind 7.0 43200 > th dose independent rect. 9 1
274 195.88 wind 7.0 43200 > th dose independent rect. 5 5
282 195.95 radiation 1.0 4320 > th dose dependent rect. 17 14
288 196.13 temperature 20.0 1440 > th dose independent rect. 5 2
290 196.17 wind 7.0 43200 < th dose independent rect. 9 1
297 196.32 wind 7.0 43200 > th dose independent rect. 24 1
302 196.37 radiation 30.0 14400 < th dose independent rect. 24 8
304 196.39 radiation 1.0 4320 > th dose dependent rect. 5 1
305 196.40 radiation 30.0 14400 < th dose independent rect. 2 6
308 196.40 precipitation 0.1 43200 > th dose dependent rect. 20 3
315 196.47 radiation 30.0 14400 < th dose independent rect. 7 1
318 196.50 wind 7.0 43200 > th dose independent rect. 6 1
319 196.50 radiation 30.0 14400 < th dose independent rect. 19 13
326 196.55 radiation 1.0 43200 > th dose independent rect. 18 11
330 196.56 temperature 30.0 1440 < th dose dependent rect. 2 7
333 196.60 radiation 1.0 14400 < th dose independent rect. 17 18
337 196.64 temperature 15.0 1440 > th dose dependent rect. 2 7
342 196.67 wind 7.0 43200 < th dose independent rect. 5 5
347 196.72 temperature 25.0 4320 < th dose dependent rect. 13 16
382 196.88 temperature 25.0 4320 < th dose dependent rect. 3 1
401 196.99 humidity 80.0 43200 < th dose independent rect. 17 2
403 196.99 temperature 25.0 4320 < th dose dependent rect. 22 6
409 197.02 temperature 25.0 4320 < th dose dependent rect. 23 2
445 197.20 temperature 25.0 4320 < th dose dependent sin 14 NA
475 197.31 wind 7.0 43200 < th dose independent rect. 24 1
488 197.34 humidity 90.0 14400 > th dose dependent rect. 5 2
497 197.38 wind 7.0 43200 > th dose independent rect. 5 7
508 197.40 radiation 1.0 14400 > th dose independent rect. 17 18
532 197.47 temperature 25.0 1440 < th dose dependent sin 8 NA
559 197.57 humidity 60.0 43200 > th dose independent rect. 8 1
561 197.57 wind 7.0 43200 > th dose independent rect. 7 5
572 197.60 temperature 25.0 1440 < th dose dependent rect. 17 17
581 197.63 wind 7.0 43200 < th dose independent rect. 5 7
582 197.63 radiation 1.0 14400 > th dose independent rect. 17 16
597 197.66 wind 7.0 43200 > th dose dependent rect. 18 21
600 197.67 radiation 1.0 14400 < th dose dependent rect. 4 15
610 197.68 temperature 25.0 270 < th dose dependent rect. 14 21
613 197.69 humidity 90.0 43200 < th dose independent rect. 5 5
660 197.74 humidity 90.0 43200 < th dose independent rect. 5 7
667 197.75 temperature 10.0 4320 > th dose dependent rect. 22 6
692 197.78 temperature 10.0 4320 > th dose dependent rect. 3 1
713 197.81 wind 7.0 43200 < th dose independent rect. 7 5
719 197.82 radiation 1.0 14400 < th dose dependent no NA NA
720 197.82 temperature 10.0 4320 > th dose dependent rect. 22 3
749 197.88 temperature 25.0 720 < th dose dependent rect. 14 19
761 197.91 radiation 1.0 14400 < th dose dependent rect. 10 23
783 197.99 radiation 10.0 4320 < th dose independent sin 13 NA
823 198.07 radiation 1.0 14400 < th dose dependent rect. 8 23
903 198.23 wind 7.0 43200 < th dose independent rect. 6 1
905 198.23 wind 7.0 43200 > th dose independent rect. 24 13
918 198.26 wind 7.0 43200 > th dose independent sin 6 NA
925 198.27 wind 5.0 43200 > th dose dependent rect. 24 1
929 198.27 temperature 25.0 270 < th dose dependent rect. 17 23
943 198.31 precipitation 0.1 43200 > th dose independent rect. 6 1
945 198.31 precipitation 0.1 43200 > th dose dependent rect. 6 1
950 198.32 humidity 50.0 43200 < th dose independent rect. 11 1