BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0197300 Os03g0197300|AK102651
(601 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36700.1 | chr4:17298443-17300337 REVERSE LENGTH=523 259 2e-69
AT2G18540.1 | chr2:8042382-8045008 REVERSE LENGTH=708 257 2e-68
AT2G28490.1 | chr2:12178812-12180983 REVERSE LENGTH=512 132 5e-31
AT3G22640.1 | chr3:8011902-8013883 REVERSE LENGTH=487 78 1e-14
>AT4G36700.1 | chr4:17298443-17300337 REVERSE LENGTH=523
Length = 522
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 216/395 (54%), Gaps = 40/395 (10%)
Query: 72 YRLHFITMSPGTLFLPVQLHADMVFYVHSGRGKVTYIEEGDSESSSLQVERGDVYNFDQG 131
Y++H IT+ P T+ LP+ LH+DMVF+V SG G + +++E E+ S ++ GDVY G
Sbjct: 80 YKIHSITLEPNTILLPLLLHSDMVFFVDSGSGILNWVDE---EAKSTEIRLGDVYRLRPG 136
Query: 132 TILYIQSNAC----GTRERLQIYAIFTSDSINADDPRH-PTSEVYSFVSDLLKGFEVEVL 186
++ Y+QS GT+ L++YAIF+ N D+ H P YS ++DL+ GF+ +L
Sbjct: 137 SVFYLQSKPVDIFLGTK--LKLYAIFS----NNDECLHDPCFGAYSSITDLMFGFDETIL 190
Query: 187 RPGFGVPREVVESIKSTKTPPAIIPYNPXXXXXXXSSNWTEEITDALWGVRDPHFLNXXX 246
+ FGVP ++E +++ PP I+ + + G D
Sbjct: 191 QSAFGVPEGIIELMRNRTKPPLIVSETLCTPGVANTWQLQPRLLKLFAGSAD-----LVD 245
Query: 247 XXXXXXXXXXXXXXXXXXAFNFYSGKPDVENCYGWSRSMTNRDLETLRGSNIGMFMVNLT 306
FN + +PD E+ YG + ++ +DL+ L+GS +G+ MVNLT
Sbjct: 246 NKKKKEKKEKKEKVKKAKTFNVFESEPDFESPYGRTITINRKDLKVLKGSMVGVSMVNLT 305
Query: 307 TGAMMGPHWNPRATEIAVVTQGAGMVQIVCPSIPSGESKKXXXXXXXXXXXXXXXXXXVR 366
G+MMGPHWNP A EI++V +GAGMV+++
Sbjct: 306 QGSMMGPHWNPWACEISIVLKGAGMVRVL--------------------RSSISSNTSSE 345
Query: 367 CKNSLFRVKEGDVLVVPRFHPMAQISFNNDSFVFVGFSTDMGHNHPQFLAGRHSVLQVIG 426
CKN F+V+EGD+ VPR HPMAQ+SFNNDS VFVGF+T +N PQFLAG S L+++
Sbjct: 346 CKNVRFKVEEGDIFAVPRLHPMAQMSFNNDSLVFVGFTTSAKNNEPQFLAGEDSALRMLD 405
Query: 427 KEILARSLGQDNSTNVGRLLSSQRESTIMACTSCA 461
+++LA SL +S + LL +Q+E+ I+ C SCA
Sbjct: 406 RQVLAASLNV-SSVTIDGLLGAQKEAVILECHSCA 439
>AT2G18540.1 | chr2:8042382-8045008 REVERSE LENGTH=708
Length = 707
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 210/392 (53%), Gaps = 42/392 (10%)
Query: 72 YRLHFITMSPGTLFLPVQLHADMVFYVHSGRGKVTYIEEGDSESSSLQVERGDVYNFDQG 131
Y + FIT+ P L LP+ LH+DMVF+VH+G G + +I+E +SE L++ RGDV+ G
Sbjct: 70 YHIQFITLEPNALLLPLLLHSDMVFFVHTGTGILNWIDE-ESERK-LELRRGDVFRLRSG 127
Query: 132 TILYIQSNACGTRERLQIYAIFTSDSINADDPRHPTSEVYSFVSDLLKGFEVEVLRPGFG 191
T+ Y+ SN E+L++YAIF D P YS V DLL GF+ LR F
Sbjct: 128 TVFYVHSN-----EKLRVYAIFNVGKCLND----PCLGAYSSVRDLLLGFDDRTLRSAFA 178
Query: 192 VPREVVESIKSTKTPPAIIPYNPXXXXXXXSSN-WTEEITDALWGVRDPHFLNXXXXXXX 250
VP +++ I+ PP I+ P + W + V D
Sbjct: 179 VPEDILRKIRDATKPPLIVNALPRNRTQGLEEDKWQSRLVRLFVSVED-------VTDHL 231
Query: 251 XXXXXXXXXXXXXXAFNFYSGKPDVENCYGWSRSMTNRDLETLRGSNIGMFMVNLTTGAM 310
FN + PD EN G S + +DL+ L+GS G+FMVNLT G+M
Sbjct: 232 AMKPIVDTNKKKSRTFNVFEEDPDFENNNGRSIVVDEKDLDALKGSRFGVFMVNLTKGSM 291
Query: 311 MGPHWNPRATEIAVVTQGAGMVQIVC-PSIPSGESKKXXXXXXXXXXXXXXXXXXVRCKN 369
+GPHWNP A EI++V +G GMV++V S+ S ++ + K+
Sbjct: 292 IGPHWNPSACEISIVLEGEGMVRVVNQQSLSSCKNDR---------------------KS 330
Query: 370 SLFRVKEGDVLVVPRFHPMAQISFNNDSFVFVGFSTDMGHNHPQFLAGRHSVLQVIGKEI 429
F V+EGDV VVP+FHPMAQ+SF N SFVF+GFST NHPQFL G+ SVL+V+ +++
Sbjct: 331 ESFMVEEGDVFVVPKFHPMAQMSFENSSFVFMGFSTSAKTNHPQFLVGQSSVLKVLDRDV 390
Query: 430 LARSLGQDNSTNVGRLLSSQRESTIMACTSCA 461
+A S N T G LL +Q+ES I C SCA
Sbjct: 391 VAVSFNLSNETIKG-LLKAQKESVIFECASCA 421
>AT2G28490.1 | chr2:12178812-12180983 REVERSE LENGTH=512
Length = 511
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 176/418 (42%), Gaps = 68/418 (16%)
Query: 74 LHFITMSPGTLFLPVQLHADMVFYVHSGRGKVTYIEEGDSESSSLQVERGDVYNFDQGTI 133
+ F+TM P TLF+P L + ++ ++ G + I + E +++ GD+Y G++
Sbjct: 119 IGFLTMEPKTLFVPQYLDSSLLIFIRQGEATLGVICK--DEFGERKLKAGDIYWIPAGSV 176
Query: 134 LYIQSNACGTRERLQIYAIFTSDSINAD--DPRHPTSEVYSFVSDLLKGFEVEVLRPGFG 191
Y+ + G R + I +I + S+ + P + + S +L GF+ L F
Sbjct: 177 FYLHNTGLGQRLHV-ICSIDPTQSLGFETFQPFY----IGGGPSSVLAGFDPHTLTSAFN 231
Query: 192 VPREVVESIKSTKTPPAIIPYNPXXXXXXXSSNWT-------EEITDAL----------- 233
V ++ + ++ I+ S+ WT EE L
Sbjct: 232 VSLPELQQMMMSQFRGPIVYVTEGPQPQPQSTVWTQFLGLRGEEKHKQLKKLLETKQGSP 291
Query: 234 --------WGVRDPHFLNXXXXXXXXXXXXXXXXXXXXXAFNFY--SGKPDVENCYGWSR 283
W R+ + ++N Y KP +N YGWS
Sbjct: 292 QDQQYSSGWSWRN---IVRSILDLTEEKNKGSGSSECEDSYNIYDKKDKPSFDNKYGWSI 348
Query: 284 SMTNRDLETLRGSNIGMFMVNLTTGAMMGPHWNPRATEIAVVTQGAGMVQIVCPSIPSGE 343
++ D + L+ S IG+++VNLT GAMM PH NP ATE +V G+G +Q+V P+ S
Sbjct: 349 ALDYDDYKPLKHSGIGVYLVNLTAGAMMAPHMNPTATEYGIVLAGSGEIQVVFPNGTSAM 408
Query: 344 SKKXXXXXXXXXXXXXXXXXXVRCKNSLFRVKEGDVLVVPRFHPMAQISFNNDSFVFVGF 403
+ RV GDV +PR+ QI+ F FVGF
Sbjct: 409 NT---------------------------RVSVGDVFWIPRYFAFCQIASRTGPFEFVGF 441
Query: 404 STDMGHNHPQFLAGRHSVLQVIGKEILARSLGQDNSTNVGRLLSSQRESTIMACTSCA 461
+T N PQFL G +S+L+ + L+ + G D T + R + +QRE+ I+ + A
Sbjct: 442 TTSAHKNRPQFLVGSNSLLRTLNLTSLSIAFGVDEET-MRRFIEAQREAVILPTPAAA 498
>AT3G22640.1 | chr3:8011902-8013883 REVERSE LENGTH=487
Length = 486
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 141/383 (36%), Gaps = 29/383 (7%)
Query: 72 YRLHFITMSPGTLFLPVQLHADMVFYVHSGRGKVTYIEEGDSESSSLQVERGDVYNFDQG 131
YR + M P T F+P L AD VF V G+G + ++ D S + +GDV G
Sbjct: 102 YRFSLVEMEPTTFFVPHHLDADAVFIVLQGKGVIEFV--TDKTKESFHITKGDVVRIPSG 159
Query: 132 TILYIQSNACGTRERLQIYAIFTSDSINADDPRHPTSEVYSFVSDLLKGFEVEVLRPGFG 191
+I + RL + ++ N D S+ F GF EVL F
Sbjct: 160 VTNFITNTNQTVPLRLAQITVPVNNPGNYKDYFPAASQ---FQQSYFNGFTKEVLSTSFN 216
Query: 192 VPREVVESI--KSTKTPPAIIPYNPXXXXXXXSSNWTEEITDALWGVRDPHFLNXXXXXX 249
VP E++ + +S + II S + +E+ + +
Sbjct: 217 VPEELLGRLVTRSKEIGQGII--------RRISPDQIKELAEHATSPSN-------KHKA 261
Query: 250 XXXXXXXXXXXXXXXAFNFYSGKPDVENCYGWSRSMTNRDLETLRGSNIGMFMVNLTTGA 309
FN ++ P N +G ++ L+ +I N+T G+
Sbjct: 262 KKEKEEDKDLRTLWTPFNLFAIDPIYSNDFGHFHEAHPKNYNQLQDLHIAAAWANMTQGS 321
Query: 310 MMGPHWNPRATEIAVVTQGAGMVQIVCPSIPSGESKKXXXXXXXXXXXXXXXXXXVRCKN 369
+ PH+N + T + V G ++ P ++ V
Sbjct: 322 LFLPHFNSKTTFVTFVENGCARFEMATPYKFQRGQQQWPGQGQEEEEDMSENVHKV---- 377
Query: 370 SLFRVKEGDVLVVPRFHPMAQISFNNDSFVFVGFSTDMGHNHPQFLAGRHSVLQVIGKEI 429
+ RV +G+V +VP HP +S + D F+ VGF ++ FLAG ++L +
Sbjct: 378 -VSRVCKGEVFIVPAGHPFTILSQDQD-FIAVGFGIYATNSKRTFLAGEENLLSNLNPAA 435
Query: 430 LARSLGQDNSTNVGRLLSSQRES 452
+ G S +L +SQ S
Sbjct: 436 TRVTFGV-GSKVAEKLFTSQNYS 457
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,577,418
Number of extensions: 294185
Number of successful extensions: 612
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 7
Length of query: 601
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 497
Effective length of database: 8,255,305
Effective search space: 4102886585
Effective search space used: 4102886585
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)