BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0332100 Os03g0332100|Os03g0332100
         (135 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0332100  Conserved hypothetical protein                      178   1e-45
Os07g0681300  Cytochrome P450 family protein                       92   9e-20

>Os03g0332100 Conserved hypothetical protein
          Length = 135

 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 89/120 (74%)

Query: 16  SLWCVGACCLAAYLYRVVWVAPRRVLAEFRRQGIGGPRPSFPYGNLADMXXXXXXXXXXX 75
           SLWCVGACCLAAYLYRVVWVAPRRVLAEFRRQGIGGPRPSFPYGNLADM           
Sbjct: 16  SLWCVGACCLAAYLYRVVWVAPRRVLAEFRRQGIGGPRPSFPYGNLADMREAVAAARHQL 75

Query: 76  XXXXXXXXXXXXXXXXXXXXIVHDYRPAVLPFYEKWRKDYGLVKNNITELTDYGSSRATQ 135
                               IVHDYRPAVLPFYEKWRKDYGLVKNNITELTDYGSSRATQ
Sbjct: 76  AEARRRRRARDSGDGGSGAGIVHDYRPAVLPFYEKWRKDYGLVKNNITELTDYGSSRATQ 135



>Os07g0681300 Cytochrome P450 family protein
          Length = 526

 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 23  CCLAAYLYRVVWVAPRRVLAEFRRQGIGGPRPSFPYGNLADMXXXXXXXXXXXXXXXXXX 82
           C +AAYLY V+W+AP R+ A  RRQGIGGP PSFPYGNLADM                  
Sbjct: 8   CGVAAYLYYVLWLAPERLRAHLRRQGIGGPTPSFPYGNLADM----------RSHAAAAA 57

Query: 83  XXXXXXXXXXXXXIVHDYRPAVLPFYEKWRKDYGLV 118
                        IVHDYR AV PFYE WRK YG V
Sbjct: 58  GGKATGEGRQEGDIVHDYRQAVFPFYENWRKQYGPV 93



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.141    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,602,530
Number of extensions: 100102
Number of successful extensions: 256
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 2
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)