Os03g0332100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0332100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 303.37 | 0.818 | 4.01 | 0.0665 | 2.02 | 0.964 | 0.275 | -1.71 | 0.299 | 10.2 | 23.7 | 1194 | -- | -- |
| 309.27 | 0.819 | 4.07 | -0.516 | 1.99 | 1.02 | 0.09 | -- | 0.156 | 10.1 | 23.4 | 1070 | -- | -- |
| 302.88 | 0.811 | 4.02 | 0.0153 | 1.99 | 0.956 | -- | -1.58 | 0.27 | 10.2 | 23.46 | 1116 | -- | -- |
| 308.54 | 0.818 | 4.06 | -0.558 | 1.99 | 0.915 | -- | -- | 0.131 | 10.2 | 23.4 | 1070 | -- | -- |
| 456.88 | 0.996 | 4.07 | 0.00963 | -- | 1.87 | -- | -1.36 | 0.361 | -- | 25.3 | 810 | -- | -- |
| 345.37 | 0.871 | 4.17 | -0.932 | 2.11 | -- | 0.0914 | -- | -0.309 | 10.3 | -- | -- | -- | -- |
| 345.4 | 0.87 | 4.17 | -0.928 | 2.11 | -- | -- | -- | -0.309 | 10.3 | -- | -- | -- | -- |
| 461.61 | 1 | 4.07 | -0.385 | -- | 1.91 | -- | -- | 0.366 | -- | 25.3 | 804 | -- | -- |
| 316.68 | 0.829 | 4.06 | -- | 1.98 | 1.01 | -- | -- | 0.199 | 10.2 | 23.5 | 1116 | -- | -- |
| 615.99 | 1.16 | 4.22 | -0.961 | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
| 368.09 | 0.897 | 4.15 | -- | 2.11 | -- | -- | -- | -0.206 | 10.4 | -- | -- | -- | -- |
| 465.3 | 1 | 4.06 | -- | -- | 1.97 | -- | -- | 0.431 | -- | 25.28 | 804 | -- | -- |
| 640.35 | 1.18 | 4.2 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 296.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 3 | 296.36 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 5 | 296.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 15 | 298.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 20 | 298.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 32 | 299.92 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 18 |
| 40 | 300.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 42 | 300.27 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 61 | 300.35 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 64 | 300.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 68 | 300.60 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 78 | 300.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 111 | 301.41 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 138 | 301.73 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 144 | 301.79 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 153 | 301.90 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 181 | 302.04 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 186 | 302.05 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 198 | 302.07 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 201 | 302.09 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 6 |
| 206 | 302.10 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 277 | 302.22 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 310 | 302.32 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 0 | NA |
| 355 | 302.42 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 369 | 302.46 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 416 | 302.55 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 419 | 302.55 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 420 | 302.55 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 430 | 302.56 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 467 | 302.60 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 471 | 302.61 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 598 | 302.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 786 | 303.07 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 817 | 303.12 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 861 | 303.18 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 865 | 303.19 | atmosphere | 1000 | 14400 | > th | dose independent | sin | 4 | NA |
| 866 | 303.19 | atmosphere | 1000 | 14400 | < th | dose independent | sin | 4 | NA |
| 889 | 303.23 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 962 | 303.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 966 | 303.30 | atmosphere | 1000 | 14400 | < th | dose dependent | no | NA | NA |
| 982 | 303.31 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 991 | 303.32 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 9 | 23 |