BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0330300 Os03g0330300|AK060756
         (1073 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0330300  Viral attachment protein, fibre shaft repeat c...  1885   0.0  
Os07g0616000  Conserved hypothetical protein                       69   1e-11

>Os03g0330300 Viral attachment protein, fibre shaft repeat containing protein
          Length = 1073

 Score = 1885 bits (4882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 942/1051 (89%), Positives = 942/1051 (89%)

Query: 1    MEGAVASNVELDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCS 60
            MEGAVASNVELDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCS
Sbjct: 1    MEGAVASNVELDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCS 60

Query: 61   TAGTFKLSLSGNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQSL 120
            TAGTFKLSLSGNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQSL
Sbjct: 61   TAGTFKLSLSGNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQSL 120

Query: 121  YSKEQRNPMGGALSGGVFGTIGVEQQGNVGPNSSEATKNEXXXXXXXXXXXXKEEIFALL 180
            YSKEQRNPMGGALSGGVFGTIGVEQQGNVGPNSSEATKNE            KEEIFALL
Sbjct: 121  YSKEQRNPMGGALSGGVFGTIGVEQQGNVGPNSSEATKNELLRALDLRLTVLKEEIFALL 180

Query: 181  NRAVVSNMSTRDVSDLSSFVQHFGASEFSWLMRCLLLIPDCQPSEVSQQQSFPAEKDDKG 240
            NRAVVSNMSTRDVSDLSSFVQHFGASEFSWLMRCLLLIPDCQPSEVSQQQSFPAEKDDKG
Sbjct: 181  NRAVVSNMSTRDVSDLSSFVQHFGASEFSWLMRCLLLIPDCQPSEVSQQQSFPAEKDDKG 240

Query: 241  ENALHTRNISSHTIIQRPITNNVSPAKLAQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
            ENALHTRNISSHTIIQRPITNNVSPAKLAQI                             
Sbjct: 241  ENALHTRNISSHTIIQRPITNNVSPAKLAQIERESSTESDDSSESSAEDEAVVERSRPLM 300

Query: 301  XXXXXXXXXXXXXXVQIGRSGSRRSTAIAIKSLSYFPPSQRIPLDKDDESGSCNGETDQP 360
                          VQIGRSGSRRSTAIAIKSLSYFPPSQRIPLDKDDESGSCNGETDQP
Sbjct: 301  RSASPRRSASPMRRVQIGRSGSRRSTAIAIKSLSYFPPSQRIPLDKDDESGSCNGETDQP 360

Query: 361  SRKSDNNVRRMSVQDAINLFESKQKDQNPDSQNKKAGLFATKSVLRRWSAGMGDSLNNNS 420
            SRKSDNNVRRMSVQDAINLFESKQKDQNPDSQNKKAGLFATKSVLRRWSAGMGDSLNNNS
Sbjct: 361  SRKSDNNVRRMSVQDAINLFESKQKDQNPDSQNKKAGLFATKSVLRRWSAGMGDSLNNNS 420

Query: 421  EEKTIDSTSQSKSNNTGSDSEKDGAETQAEPGSASASNTVVTPSVEGFHTNMQGVAMPET 480
            EEKTIDSTSQSKSNNTGSDSEKDGAETQAEPGSASASNTVVTPSVEGFHTNMQGVAMPET
Sbjct: 421  EEKTIDSTSQSKSNNTGSDSEKDGAETQAEPGSASASNTVVTPSVEGFHTNMQGVAMPET 480

Query: 481  ETAVSSHTEISAEQTKSGQEENSDRAMASAEWNRQKEAELNQMLMKMMQVMPGKFSSANV 540
            ETAVSSHTEISAEQTKSGQEENSDRAMASAEWNRQKEAELNQMLMKMMQVMPGKFSSANV
Sbjct: 481  ETAVSSHTEISAEQTKSGQEENSDRAMASAEWNRQKEAELNQMLMKMMQVMPGKFSSANV 540

Query: 541  TTTGITSTNEKKGGLQGQHKEKRDSKVRTDKGGRRPAKEASTRPLKETVGQKKAAITPKT 600
            TTTGITSTNEKKGGLQGQHKEKRDSKVRTDKGGRRPAKEASTRPLKETVGQKKAAITPKT
Sbjct: 541  TTTGITSTNEKKGGLQGQHKEKRDSKVRTDKGGRRPAKEASTRPLKETVGQKKAAITPKT 600

Query: 601  GTAAEKRNSPVPQRARRNSSPPVLPKELTXXXXXXXXXXXXXXXXVTRSSWSGGSLXXXX 660
            GTAAEKRNSPVPQRARRNSSPPVLPKELT                VTRSSWSGGSL    
Sbjct: 601  GTAAEKRNSPVPQRARRNSSPPVLPKELTPKAPARKSSPKPSPAPVTRSSWSGGSLTKAT 660

Query: 661  XXXXXXSSPGTVSAPTATSRRRTPVAPSSSQPTSKVERSAQPVKNKKETVAASKPAIKGI 720
                  SSPGTVSAPTATSRRRTPVAPSSSQPTSKVERSAQPVKNKKETVAASKPAIKGI
Sbjct: 661  TAQKTKSSPGTVSAPTATSRRRTPVAPSSSQPTSKVERSAQPVKNKKETVAASKPAIKGI 720

Query: 721  EEXXXXXXXXXXXXXXXXPISDEKSSAATRPNLYNKVAKKSSVVPLESKPSKKATGISQS 780
            EE                PISDEKSSAATRPNLYNKVAKKSSVVPLESKPSKKATGISQS
Sbjct: 721  EEKKTKTATKTSRLAKSTPISDEKSSAATRPNLYNKVAKKSSVVPLESKPSKKATGISQS 780

Query: 781  AGTDAVKSKMPQLDDSSNDIGNITQAEDKEHSAVTTQPKTTKVLEADLAQPAHDVDENLE 840
            AGTDAVKSKMPQLDDSSNDIGNITQAEDKEHSAVTTQPKTTKVLEADLAQPAHDVDENLE
Sbjct: 781  AGTDAVKSKMPQLDDSSNDIGNITQAEDKEHSAVTTQPKTTKVLEADLAQPAHDVDENLE 840

Query: 841  ISLDNDLNIEKTENSAPSLATTEMDSSEQVEPHTEVQPPPEEDMGISSAAWVEVEHEEVT 900
            ISLDNDLNIEKTENSAPSLATTEMDSSEQVEPHTEVQPPPEEDMGISSAAWVEVEHEEVT
Sbjct: 841  ISLDNDLNIEKTENSAPSLATTEMDSSEQVEPHTEVQPPPEEDMGISSAAWVEVEHEEVT 900

Query: 901  DVGENVVPEDVTXXXXXXXXXXXXRIRHSLSQMLQADSNEPEIIEWGNAENPPAIVFHKD 960
            DVGENVVPEDVT            RIRHSLSQMLQADSNEPEIIEWGNAENPPAIVFHKD
Sbjct: 901  DVGENVVPEDVTSPSIEPLPSSSPRIRHSLSQMLQADSNEPEIIEWGNAENPPAIVFHKD 960

Query: 961  SPKGLKRLLKFARKNKGDSNSNGWASPSVVSEGEDELEEPRGGNEGVNSSRRTFDGPKTN 1020
            SPKGLKRLLKFARKNKGDSNSNGWASPSVVSEGEDELEEPRGGNEGVNSSRRTFDGPKTN
Sbjct: 961  SPKGLKRLLKFARKNKGDSNSNGWASPSVVSEGEDELEEPRGGNEGVNSSRRTFDGPKTN 1020

Query: 1021 SILSAQSTTGSFNSTNSDRLRDRPGAAPSTK 1051
            SILSAQSTTGSFNSTNSDRLRDRPGAAPSTK
Sbjct: 1021 SILSAQSTTGSFNSTNSDRLRDRPGAAPSTK 1051



>Os07g0616000 Conserved hypothetical protein
          Length = 1365

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 26/213 (12%)

Query: 11  LDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCSTAGT-FKLSL 69
           LD A+FQ+S  ++R E +    G TE IASG     V HL  A +  +        +L L
Sbjct: 7   LDFALFQLSPRRSRCELVVSGNGRTERIASGSVKPFVAHLRAAEEQAAAQPPPPAIRLQL 66

Query: 70  SGNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQSLYSKEQRNPM 129
              A   +WF+K T+ RF+  +++P+  + AN    E+SQLE  RK    +Y++      
Sbjct: 67  DRRA---AWFSKGTLERFVRFVSTPEVLEMANTFDAEMSQLEGARK----IYAQ------ 113

Query: 130 GGALSGGVFGTIGVEQQGNVGPNSSEATKNEXXXXXXXXXXXXKEEIFALLNRAVVSNMS 189
                      +     G     +++ TK E            K+++     RA  +  +
Sbjct: 114 ----------GVAGGADGAESAAAADITKKELLRAIDVRLSALKQDLVTACARASSAGFN 163

Query: 190 TRDVSDLSSFVQHFGASEFSWLMRCLLLIPDCQ 222
              VS+L  F  HFGA+  S    C   +  CQ
Sbjct: 164 PDSVSELVLFADHFGANRLSEA--CNKFMSLCQ 194



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.304    0.121    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,443,645
Number of extensions: 1321337
Number of successful extensions: 4098
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4094
Number of HSP's successfully gapped: 3
Length of query: 1073
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 962
Effective length of database: 11,240,047
Effective search space: 10812925214
Effective search space used: 10812925214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 161 (66.6 bits)