BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0329200 Os03g0329200|AK102918
(677 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0329200 Zinc finger, CCCH-type domain containing protein 1157 0.0
Os03g0328900 Zinc finger, CCCH-type domain containing protein 833 0.0
Os07g0682400 Zinc finger, CCCH-type domain containing protein 751 0.0
Os11g0125700 166 6e-41
Os12g0123300 149 6e-36
Os08g0126700 Zinc finger, CCCH-type domain containing protein 127 2e-29
Os07g0583300 126 7e-29
>Os03g0329200 Zinc finger, CCCH-type domain containing protein
Length = 677
Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/677 (85%), Positives = 579/677 (85%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXFLLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAAD 120
FLLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAAD
Sbjct: 61 LALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAAD 120
Query: 121 EMVGAGEELMSXXXXXXXXXXXXXXXXXXXXDALLDDFELQEQLAFLHDGAGGVNPGHAL 180
EMVGAGEELMS DALLDDFELQEQLAFLHDGAGGVNPGHAL
Sbjct: 121 EMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFLHDGAGGVNPGHAL 180
Query: 181 QAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGGDGFGWKPCLYYARG 240
QAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGGDGFGWKPCLYYARG
Sbjct: 181 QAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGGDGFGWKPCLYYARG 240
Query: 241 FCKNGSTCRFVHGGLSDDAAMDATTAEQQQCQDFLLRSKSQRLGPAAFPFTPTGSLPASP 300
FCKNGSTCRFVHGGLSDDAAMDATTAEQQQCQDFLLRSKSQRLGPAAFPFTPTGSLPASP
Sbjct: 241 FCKNGSTCRFVHGGLSDDAAMDATTAEQQQCQDFLLRSKSQRLGPAAFPFTPTGSLPASP 300
Query: 301 SATSKCXXXXXXXXXXXXXXXXXXXXXXXXXGGDEAHKFMGRPRLDRVDFASMMNPGSRQ 360
SATSKC GGDEAHKFMGRPRLDRVDFASMMNPGSRQ
Sbjct: 301 SATSKCLSLLLQQQQQHNDNQRAAAAALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQ 360
Query: 361 IYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPH 420
IYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPH
Sbjct: 361 IYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPH 420
Query: 421 FICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSA 480
FICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSA
Sbjct: 421 FICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSA 480
Query: 481 NELMLRRKXXXXXXXXXXXXXIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTPITNA 540
NELMLRRK IDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTPITNA
Sbjct: 481 NELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTPITNA 540
Query: 541 FTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHN 600
FTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHN
Sbjct: 541 FTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHN 600
Query: 601 LPDSPXXXXXXXXXXXXXXXXXXIGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPR 660
LPDSP IGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPR
Sbjct: 601 LPDSPFASSTKSTAFFTATAATAIGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPR 660
Query: 661 TCFFPMPRLSEHGAIGM 677
TCFFPMPRLSEHGAIGM
Sbjct: 661 TCFFPMPRLSEHGAIGM 677
>Os03g0328900 Zinc finger, CCCH-type domain containing protein
Length = 687
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/705 (66%), Positives = 497/705 (70%), Gaps = 46/705 (6%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXX-FLLSRQNSGR--------CPAPSPSSWAQAQPFSRSN 111
FLLSRQNSGR A SPSSWAQAQPFSRSN
Sbjct: 61 LALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFSRSN 120
Query: 112 SMGNGGAADEMVGAGEELMSXXXXXXXXXXXXXXXXXXXXDALLDDFELQEQLAFLHDGA 171
G+ DE+VGAGEEL+S D LLDDF+LQEQLAFL++G
Sbjct: 121 -----GSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLNEG- 174
Query: 172 GGVNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGG---DG 228
GVNP H LQ FDGAECRSPGPGE GGM PYGL WANGGPGHRRSASVNELCLGG DG
Sbjct: 175 -GVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSDG 233
Query: 229 FGWKPCLYYARGFCKNGSTCRFVHGGLSDDAA------MDATTAEQQQCQDFLLRSKSQR 282
FGWKPCLYYARGFCKNGS+CRFVHG DDAA MDA TAEQQQCQDFLLRSKSQR
Sbjct: 234 FGWKPCLYYARGFCKNGSSCRFVHG---DDAAALTGAAMDAATAEQQQCQDFLLRSKSQR 290
Query: 283 LGPAAFPFTPTGSLPASPSATSKCXXXXXXXXXXXXXXXXXXXXXXXXXGGDEAHKFMGR 342
LGPAAFP++PTGSLP SPSA +KC G DEAHKFMGR
Sbjct: 291 LGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLG-GSDEAHKFMGR 349
Query: 343 PRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFV 402
PRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFV
Sbjct: 350 PRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFV 409
Query: 403 TFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFC-CMSPTGLDAR 461
TFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRK QGDF C +PTGLD R
Sbjct: 410 TFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRK-HQGDFSGCTTPTGLDGR 468
Query: 462 DPFDFHQLGARMLQHSNSANELMLRRKXXXXXXXXXXXXXIDLHSRRLIGLQLLDLKSSA 521
DPFD HQLGARMLQHSNS NE+MLRRK I+LHSRRL+ LQLLDLK+ A
Sbjct: 469 DPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKNRA 528
Query: 522 AVHAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVN-GGNK 580
A M++PT NAF S QP ATT+VESPP S QL + E K+VN GG+K
Sbjct: 529 AAAVTTAMAMTIPT--ANAFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDK 586
Query: 581 ADSAGEVTRNADSDQSGEHNLPDSPXXXXXXXXXXXXXXXXXXIGSEGDFTTGSSC---- 636
+SAGE + NADSDQS EHNLPDSP ++ SSC
Sbjct: 587 EESAGEASLNADSDQSLEHNLPDSPFASPTKSSVSAHQSFTT---TDTGVVATSSCSASH 643
Query: 637 ---NIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRL-SEHGAIGM 677
+ G +A G N LRP TLDIPSPR FF + RL S+HGAIGM
Sbjct: 644 VGISAGTNAGGGINHLRPSTLDIPSPRD-FFSVSRLASDHGAIGM 687
>Os07g0682400 Zinc finger, CCCH-type domain containing protein
Length = 682
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/704 (61%), Positives = 472/704 (67%), Gaps = 49/704 (6%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
MDAYEATKVVFSRIQALDPDHAAKIMG LLIQDHG+KEMIRLAFGPEALLH+VMA+ARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 61 XXXXXXX---XXXXXXXXXXXXXXXFLLSRQNSGRC-------PAPSPSSWAQAQPFSRS 110
F+LSRQNSGRC SPSSWA FSR+
Sbjct: 61 LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120
Query: 111 NSMGNGGAADEMVGAGEELMSXXXXXXXXXXXXXXXXXXXXDALLDDFELQEQLAFLHDG 170
NS+ NG A +EMVG G+EL+S D L+D+ +LQ+QLAFL++G
Sbjct: 121 NSISNG-AGEEMVGLGDELISPANGGGPPSPFFGG------DPLMDELQLQDQLAFLNEG 173
Query: 171 AGGVNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGG-DGF 229
GV GH + FDG ECRSPG G+ GG+ Y L WANGGPGHRRSASV+ELCLGG DG
Sbjct: 174 --GVPAGHQMPMFDGGECRSPGGGD-GGLFSYNLGWANGGPGHRRSASVSELCLGGADGL 230
Query: 230 GWKPCLYYARGFCKNGSTCRFVHGGLSDDAA--MDATTAEQQQCQDFLLRSKSQRLGPAA 287
GWKPCLYYARG+CKNGS CRFVHGGL DDAA MD + EQQ CQDFL+RSKSQRL AA
Sbjct: 231 GWKPCLYYARGYCKNGSACRFVHGGLPDDAAGKMDPSAVEQQ-CQDFLIRSKSQRLAAAA 289
Query: 288 FPFTPTGSLPASPSATSKCXXXXXXXXXXXXXXXXXXXXXXXXXGGDEAHKFMGRPRLDR 347
FP++PTGSLP SPSA +KC GGDEAHKFMGRPRL+R
Sbjct: 290 FPYSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALMLGGDEAHKFMGRPRLER 349
Query: 348 VDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYP 407
DFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYP
Sbjct: 350 ADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYP 409
Query: 408 ETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQG----DF-CCMSPTGLDARD 462
ETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQ Q DF C +PTGLDARD
Sbjct: 410 ETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQHQPGERVDFSSCTTPTGLDARD 469
Query: 463 PFDFHQLGARMLQHSNSANELMLRRKXXXXXXXXXXXXXIDLHSRRLIGLQLLDLKSSAA 522
PFD HQLGARMLQHSNSANE++LRRK I+LHSRRL+GLQLLD KS AA
Sbjct: 470 PFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDFKSRAA 529
Query: 523 VHAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTGQLMASCG-SPSEGKVVNGGNKA 581
+ PTPI N F++ Q A ESPP S G+L G + K VNG +K
Sbjct: 530 ---------AAPTPIGNPFSASQTAANATGESPPDS-GELGKGSGFLLAHKKAVNGADKE 579
Query: 582 DSAGEVTR-NADSDQSGEHNLPDSPXXXXXXXXXXX------XXXXXXXIGSEGDFTTGS 634
+S GE + N DSDQS EHNLPDSP S G T
Sbjct: 580 ESTGESSSPNTDSDQSVEHNLPDSPFASPTKSAGFARDPFAPTEAEISATASTGCSATYV 639
Query: 635 SCNIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRL-SEHGAIGM 677
N G S G N L P LD+PSP+ FFPM RL S+HGAIGM
Sbjct: 640 GINNGASN-GGTNHLLPSALDMPSPKPYFFPMSRLASDHGAIGM 682
>Os11g0125700
Length = 401
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 112/165 (67%), Gaps = 23/165 (13%)
Query: 332 GGDEAHKFMGRP-RLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVR 390
G D+ ++ RP ++D+ D + N +RQIYLTFP DS F +EDV NYFS+YG V DVR
Sbjct: 141 GSDDMQEYSSRPPQIDQSDLTN--NCSARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVR 198
Query: 391 IPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDF 450
IPYQ+KRMFGFVTF Y +TVKLILAKGNPH+ICDARVLVKPYKEK KVP+K K QQ D
Sbjct: 199 IPYQEKRMFGFVTFAYQKTVKLILAKGNPHYICDARVLVKPYKEKDKVPNK--KFQQSD- 255
Query: 451 CCMSPTGLD------ARDPFDF--HQLGARMLQHSNSANELMLRR 487
SP+ ++ +R PFD HQ+ ++ NE +R
Sbjct: 256 ---SPSYMNHNRLLYSRVPFDLRRHQIDNKL------KNEFAMRE 291
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
M AYEATKVVF+R+QAL+P+ A I+G+LL +D + +MI LA GP+ LL S++A+ R +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDKNEMDMIHLACGPDNLLQSIIAKVRTD 60
>Os12g0123300
Length = 456
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 84/107 (78%), Gaps = 3/107 (2%)
Query: 332 GGDEAHKFMGRP-RLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVR 390
G D+ ++ RP ++D+ D + N +RQIYLTFP DS F +EDV NYFS+YG V DVR
Sbjct: 141 GSDDMQEYSSRPPQIDQSDLTN--NCSARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVR 198
Query: 391 IPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGK 437
IPYQ+K MFGFVTF Y +TVKLILAKGNPH+ICDARVLVKPYKEK K
Sbjct: 199 IPYQEKCMFGFVTFAYQKTVKLILAKGNPHYICDARVLVKPYKEKDK 245
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 48/60 (80%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
M AYEATKVVF+R+QAL+P+ A I+G+LL +D+ + +MIRLA GP+ LL S++A+ R +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDNNEMDMIRLACGPDNLLQSIIAKVRTD 60
>Os08g0126700 Zinc finger, CCCH-type domain containing protein
Length = 604
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 68/84 (80%)
Query: 358 SRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKG 417
S QIYLTFPA+STF E+DV+NYF YGPV DVRIP Q++RMFGFV+F PETV IL +
Sbjct: 372 SHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRR 431
Query: 418 NPHFICDARVLVKPYKEKGKVPDK 441
NPHFIC +RVLVKPY+EK K D+
Sbjct: 432 NPHFICGSRVLVKPYREKSKCVDR 455
>Os07g0583300
Length = 438
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 125/279 (44%), Gaps = 37/279 (13%)
Query: 235 LYYARGFCKNGSTCRFVHGGLSD------DAAMDATTAEQQQCQDFLL---------RSK 279
++ RG+CK G C+F HG + + + + + ++ L+ R
Sbjct: 146 FHFFRGYCKKGVNCQFFHGSVPELHNPRQVHPFASLSKLDMEIRELLIGIPPPVAVDRLP 205
Query: 280 SQRLGPAAFPFTPTGSLPASPS-ATSKCXXXXXXXXXXXXXXXXXXXXXXXXXGGDEAHK 338
S P P G L S + C ++A K
Sbjct: 206 SMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHVVLVEDARK 265
Query: 339 FMGRPRLDRVDFASMMN-----PGSRQIYLTFPADSTFREEDVSNYFSI---------YG 384
+D + A N GS QIY+TFP S F ++DV NYF +G
Sbjct: 266 ----KYMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKYCLNFIVTRQFG 321
Query: 385 PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRK 444
PV VRIPYQ+KRMFGFV+F+Y ETV+LIL+KG HFIC RVLVK Y EK ++ YRK
Sbjct: 322 PVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSELRKIYRK 381
Query: 445 QQQGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSANEL 483
+Q D+ +G + H +G M + S+ +++L
Sbjct: 382 NKQFDYREHRTSGFGVTNE---HYIGNNMKKKSHRSDDL 417
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,793,874
Number of extensions: 1070499
Number of successful extensions: 3204
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 3171
Number of HSP's successfully gapped: 9
Length of query: 677
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 569
Effective length of database: 11,396,689
Effective search space: 6484716041
Effective search space used: 6484716041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)