Os03g0329200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os03g0329200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.11 | 0.576 | 4.25 | -0.622 | 0.555 | -0.469 | -1.29 | 4.14 | -0.54 | 23.2 | 9.99 | 1467 | -- | -- |
| 174.71 | 0.616 | 4.26 | -0.429 | 0.488 | -0.446 | -1.25 | -- | -0.514 | 23.3 | 9.999 | 5804 | -- | -- |
| 148.95 | 0.568 | 4.25 | -0.628 | 0.543 | -0.502 | -- | 4.14 | -0.526 | 23.2 | 9.728 | 2486 | -- | -- |
| 177.2 | 0.62 | 4.26 | -0.385 | 0.488 | -0.448 | -- | -- | -0.514 | 23.3 | 9.989 | 24420 | -- | -- |
| 153.44 | 0.577 | 4.22 | -0.547 | -- | -0.644 | -- | 4.76 | -0.467 | -- | 8.654 | 2483 | -- | -- |
| 183 | 0.634 | 4.28 | -0.576 | 0.495 | -- | -1.17 | -- | -0.46 | 23 | -- | -- | -- | -- |
| 188.53 | 0.643 | 4.28 | -0.531 | 0.503 | -- | -- | -- | -0.457 | 23.5 | -- | -- | -- | -- |
| 187.05 | 0.637 | 4.25 | -0.285 | -- | -0.785 | -- | -- | -0.523 | -- | 18.08 | 45722 | -- | -- |
| 169.47 | 0.606 | 4.28 | -- | 0.539 | -0.918 | -- | -- | -0.381 | 23.1 | 19.51 | 45885 | -- | -- |
| 204.39 | 0.668 | 4.27 | -0.517 | -- | -- | -- | -- | -0.452 | -- | -- | -- | -- | -- |
| 195.95 | 0.655 | 4.27 | -- | 0.497 | -- | -- | -- | -0.398 | 23.5 | -- | -- | -- | -- |
| 184.35 | 0.632 | 4.26 | -- | -- | -0.977 | -- | -- | -0.371 | -- | 19.2 | 45760 | -- | -- |
| 211.44 | 0.679 | 4.25 | -- | -- | -- | -- | -- | -0.394 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.11 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 5 | 139.62 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 6 | 139.78 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 7 | 139.83 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 12 | 140.07 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 18 | 140.63 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 20 | 140.88 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 23 | 141.13 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 24 | 141.22 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 26 | 141.46 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 27 | 141.55 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 28 | 141.57 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 31 | 141.69 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 32 | 141.73 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 42 | 142.01 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 75 | 142.42 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 96 | 142.76 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 108 | 142.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 110 | 142.84 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 123 | 142.99 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 124 | 143.00 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 142 | 143.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 165 | 143.40 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 182 | 143.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 183 | 143.51 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 187 | 143.55 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 196 | 143.62 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 202 | 143.65 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 225 | 143.79 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 254 | 143.96 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 278 | 144.11 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 291 | 144.20 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 298 | 144.21 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 320 | 144.33 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 327 | 144.37 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 336 | 144.40 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 344 | 144.44 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 348 | 144.46 | temperature | 15.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 351 | 144.47 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 373 | 144.55 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 414 | 144.74 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 431 | 144.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 433 | 144.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 436 | 144.77 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 481 | 144.87 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 489 | 144.90 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 504 | 144.91 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 510 | 144.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 514 | 144.93 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 530 | 144.96 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 553 | 144.99 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 644 | 145.08 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 668 | 145.10 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 689 | 145.12 | temperature | 15.0 | 43200 | < th | dose dependent | no | NA | NA |
| 744 | 145.28 | temperature | 15.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 745 | 145.28 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 750 | 145.29 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 751 | 145.29 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 764 | 145.33 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 3 | 16 |
| 766 | 145.34 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 771 | 145.34 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 776 | 145.36 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 785 | 145.37 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 24 | 20 |
| 807 | 145.41 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 844 | 145.48 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 3 | 20 |
| 852 | 145.49 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 12 | 21 |
| 859 | 145.50 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 889 | 145.55 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 891 | 145.55 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 897 | 145.56 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 923 | 145.58 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 936 | 145.59 | temperature | 15.0 | 43200 | < th | dose independent | no | NA | NA |
| 940 | 145.59 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 12 | 14 |
| 963 | 145.61 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 12 | 16 |
| 982 | 145.62 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 997 | 145.64 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 998 | 145.64 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 1000 | 145.64 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 3 | 9 |