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Os03g0328900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.61 (0.0166) R2 : 0.00958
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0732 (0.0349) R2dN8 : 0.0124 R2N8 : 0.00958
σ : 0.312
deviance : 44.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.97 0.274 8.65 -0.698 0.0361 1.28 -0.67 -6.68 -0.0644 9.22 30.68 400 -- --
34.61 0.274 8.6 -0.296 0.0376 0.581 -0.618 -- -0.0506 8.22 31.65 416 -- --
35.53 0.278 8.65 -0.718 0.0479 1.29 -- -6.5 -0.0629 9.63 30.7 419 -- --
35.95 0.279 8.6 -0.322 0.0449 0.59 -- -- -0.0615 9.56 30.84 419 -- --
35.65 0.278 8.65 -0.705 -- 1.26 -- -6.34 -0.0637 -- 30.7 409 -- --
39.82 0.296 8.62 -0.242 0.0902 -- 0.937 -- -0.103 19.8 -- -- -- --
41.94 0.303 8.62 -0.262 0.127 -- -- -- -0.0996 17.1 -- -- -- --
36.06 0.28 8.61 -0.32 -- 0.573 -- -- -0.0634 -- 30.8 413 -- --
38.61 0.289 8.6 -- 0.0434 0.547 -- -- -0.03 11.4 31.27 414 -- --
42.78 0.306 8.62 -0.267 -- -- -- -- -0.103 -- -- -- -- --
43.75 0.309 8.61 -- 0.131 -- -- -- -0.0704 17 -- -- -- --
38.72 0.29 8.6 -- -- 0.543 -- -- -0.0319 -- 31.5 412 -- --
44.65 0.312 8.61 -- -- -- -- -- -0.0732 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.36 wind 7 14400 < th dose independent rect. 6 3
2 32.47 wind 7 14400 > th dose independent rect. 6 3
5 32.90 wind 1 14400 > th dose independent rect. 20 3
6 32.95 wind 5 14400 > th dose dependent rect. 24 10
7 33.02 wind 7 14400 > th dose dependent rect. 6 3
10 33.06 wind 5 14400 > th dose dependent rect. 4 6
15 33.14 radiation 30 14400 > th dose independent rect. 16 1
53 33.43 wind 7 14400 < th dose independent rect. 20 15
55 33.47 wind 7 14400 > th dose independent rect. 20 15
56 33.48 wind 7 14400 < th dose independent rect. 4 6
57 33.48 wind 5 14400 > th dose independent rect. 24 12
59 33.50 wind 7 14400 > th dose independent rect. 4 6
68 33.56 wind 5 14400 < th dose independent rect. 1 11
70 33.56 wind 5 14400 > th dose dependent rect. 21 14
73 33.59 radiation 40 14400 > th dose dependent rect. 15 1
94 33.61 wind 5 14400 > th dose independent sin 6 NA
96 33.62 wind 5 14400 > th dose dependent sin 8 NA
102 33.67 wind 7 14400 < th dose independent rect. 1 9
126 33.70 wind 1 14400 < th dose independent rect. 20 3
139 33.75 wind 5 14400 < th dose independent sin 6 NA
153 33.79 temperature 25 270 > th dose dependent rect. 14 21
170 33.86 temperature 25 270 > th dose dependent rect. 15 4
188 33.92 temperature 25 270 > th dose dependent rect. 15 2
199 33.95 temperature 25 270 > th dose dependent sin 18 NA
218 34.01 temperature 30 270 > th dose dependent sin 11 NA
228 34.04 temperature 30 270 > th dose dependent sin 14 NA
243 34.09 temperature 30 90 > th dose independent sin 11 NA
277 34.13 temperature 30 720 > th dose dependent rect. 18 17
324 34.22 temperature 30 720 > th dose independent rect. 9 1
330 34.23 temperature 30 720 > th dose independent rect. 18 17
349 34.25 temperature 30 270 > th dose independent rect. 15 19
351 34.25 wind 1 43200 < th dose dependent rect. 18 3
367 34.29 radiation 30 14400 < th dose independent rect. 16 16
374 34.30 humidity 50 270 < th dose dependent rect. 16 20
378 34.31 temperature 30 720 < th dose independent rect. 18 17
384 34.32 humidity 50 270 < th dose independent rect. 16 20
386 34.32 temperature 30 270 > th dose dependent no NA NA
388 34.32 temperature 30 270 > th dose dependent rect. 9 10
514 34.35 humidity 50 270 > th dose independent sin 18 NA
515 34.35 humidity 60 270 < th dose independent sin 14 NA
555 34.36 humidity 50 270 < th dose independent sin 10 NA
580 34.37 humidity 60 270 < th dose dependent sin 14 NA
612 34.40 humidity 50 270 > th dose independent no NA NA
622 34.41 temperature 25 720 > th dose dependent sin 3 NA
629 34.42 radiation 30 14400 < th dose independent rect. 16 14
633 34.42 humidity 50 270 < th dose dependent sin 10 NA
655 34.43 wind 5 14400 > th dose independent rect. 4 1
656 34.43 humidity 50 270 < th dose independent rect. 13 3
660 34.43 humidity 50 270 < th dose dependent rect. 13 3
665 34.43 radiation 10 14400 < th dose dependent rect. 17 12
669 34.44 humidity 50 270 < th dose independent rect. 15 1
676 34.44 humidity 50 270 < th dose dependent rect. 15 1
688 34.45 radiation 40 14400 < th dose dependent rect. 17 12
693 34.46 wind 5 14400 < th dose independent rect. 4 1
727 34.47 wind 3 14400 > th dose dependent rect. 4 1
729 34.47 humidity 60 270 < th dose dependent rect. 15 4
781 34.48 humidity 60 270 < th dose dependent rect. 12 7
808 34.49 humidity 70 270 < th dose dependent rect. 16 1
809 34.49 radiation 10 14400 < th dose dependent rect. 17 2
832 34.50 wind 5 14400 > th dose independent rect. 2 3
833 34.50 wind 5 14400 < th dose independent rect. 2 3
834 34.50 humidity 50 270 < th dose independent rect. 10 7
854 34.50 wind 1 14400 < th dose dependent rect. 20 3
878 34.51 radiation 1 14400 > th dose dependent rect. 17 12