BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0328900 Os03g0328900|AK102616
(687 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0328900 Zinc finger, CCCH-type domain containing protein 1108 0.0
Os03g0329200 Zinc finger, CCCH-type domain containing protein 803 0.0
Os07g0682400 Zinc finger, CCCH-type domain containing protein 795 0.0
Os11g0125700 166 6e-41
Os12g0123300 151 2e-36
Os08g0126700 Zinc finger, CCCH-type domain containing protein 127 2e-29
Os07g0583300 117 4e-26
>Os03g0328900 Zinc finger, CCCH-type domain containing protein
Length = 687
Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/687 (81%), Positives = 560/687 (81%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LALLXXXXXXXXXXXTVPAAHSPFLLSRQNSGRGXXXXXXXXXXXXXXXXXXXXXXXRSN 120
LALL TVPAAHSPFLLSRQNSGRG RSN
Sbjct: 61 LALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFSRSN 120
Query: 121 GSVDEVVGAGEELIXXXXXXXXXXXXXXXXXXXXXDVLLDDFQLQEQLAFLNEGGVNPSH 180
GSVDEVVGAGEELI DVLLDDFQLQEQLAFLNEGGVNPSH
Sbjct: 121 GSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLNEGGVNPSH 180
Query: 181 PLQGFDGAECRSXXXXXXXXXXXXXXXWANGGPGHRRSASVNELCLGGGSSDGFGWKPCL 240
PLQGFDGAECRS WANGGPGHRRSASVNELCLGGGSSDGFGWKPCL
Sbjct: 181 PLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSDGFGWKPCL 240
Query: 241 YYARGFCKNGSSCRFVHXXXXXXXXXXXXXXXXXEQQQCQDFLLRSKSQRLGPAAFPYSP 300
YYARGFCKNGSSCRFVH EQQQCQDFLLRSKSQRLGPAAFPYSP
Sbjct: 241 YYARGFCKNGSSCRFVHGDDAAALTGAAMDAATAEQQQCQDFLLRSKSQRLGPAAFPYSP 300
Query: 301 TGSLPGSPSAATKCLSLLLQQQHNDNQRXXXXXXLMLGGSDEAHKFMGRPRLDRVDFASM 360
TGSLPGSPSAATKCLSLLLQQQHNDNQR LMLGGSDEAHKFMGRPRLDRVDFASM
Sbjct: 301 TGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDFASM 360
Query: 361 MNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLI 420
MNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLI
Sbjct: 361 MNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLI 420
Query: 421 LAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARM 480
LAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARM
Sbjct: 421 LAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFSGCTTPTGLDGRDPFDLHQLGARM 480
Query: 481 LQHSNSTNEMMLRRKXXXXXXXXXXXXXXXXHSRRLMDLQLLDLKNRXXXXXXXXXXXXX 540
LQHSNSTNEMMLRRK HSRRLMDLQLLDLKNR
Sbjct: 481 LQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLMDLQLLDLKNRAAAAVTTAMAMTI 540
Query: 541 XXXXXFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSD 600
FGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSD
Sbjct: 541 PTANAFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEESAGEASLNADSD 600
Query: 601 QSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLR 660
QSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLR
Sbjct: 601 QSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLR 660
Query: 661 PSTLDIPSPRDFFSVSRLASDHGAIGM 687
PSTLDIPSPRDFFSVSRLASDHGAIGM
Sbjct: 661 PSTLDIPSPRDFFSVSRLASDHGAIGM 687
>Os03g0329200 Zinc finger, CCCH-type domain containing protein
Length = 677
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/703 (65%), Positives = 487/703 (69%), Gaps = 42/703 (5%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LALLXXXXXXXXXXXTVPAAHSPFLLSRQNSGRGXXXXXXXXXXXXXXXXXXXXXXXRSN 120
LALL TVPAAHSPFLLSRQNSGR RSN
Sbjct: 61 LALLPPPQAASSSP-TVPAAHSPFLLSRQNSGR--------CPAPSPSSWAQAQPFSRSN 111
Query: 121 -----GSVDEVVGAGEELIXXXXXXXXXXXXXXXXXXXXXDVLLDDFQLQEQLAFLNEG- 174
G+ DE+VGAGEEL+ D LLDDF+LQEQLAFL++G
Sbjct: 112 SMGNGGAADEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFELQEQLAFLHDGA 171
Query: 175 -GVNPSHPLQGFDGAECRSXXXXXXXXXXXXXXXWANGGPGHRRSASVNELCLGGGSSDG 233
GVNP H LQ FDGAECRS WANGGPGHRRSASVNELCLGG DG
Sbjct: 172 GGVNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGG---DG 228
Query: 234 FGWKPCLYYARGFCKNGSSCRFVHXXXXXXXXXXXXXXXXXEQQQCQDFLLRSKSQRLGP 293
FGWKPCLYYARGFCKNGS+CRFVH EQQQCQDFLLRSKSQRLGP
Sbjct: 229 FGWKPCLYYARGFCKNGSTCRFVHGGLSDDAAMDATTA---EQQQCQDFLLRSKSQRLGP 285
Query: 294 AAFPYSPTGSLPGSPSAATKCLSLLLQQQ--HNDNQRXXXXXXLMLGGSDEAHKFMGRPR 351
AAFP++PTGSLP SPSA +KCLSLLLQQQ HNDNQR ++ GG DEAHKFMGRPR
Sbjct: 286 AAFPFTPTGSLPASPSATSKCLSLLLQQQQQHNDNQRAAAAALMLAGG-DEAHKFMGRPR 344
Query: 352 LDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTF 411
LDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTF
Sbjct: 345 LDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTF 404
Query: 412 VYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRK-HQGDFSGCTTPTGLDGRDP 470
VYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRK QGDF C +PTGLD RDP
Sbjct: 405 VYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFC-CMSPTGLDARDP 463
Query: 471 FDLHQLGARMLQHSNSTNEMMLRRKXXXXXXXXXXXXXXXXHSRRLMDLQLLDLKNRXXX 530
FD HQLGARMLQHSNS NE+MLRRK HSRRL+ LQLLDLK+
Sbjct: 464 FDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAV 523
Query: 531 XXXXXXXXX--XXXXXXFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEE 588
F S QP ATT+VESPP S QL + E K+VN GG+K +
Sbjct: 524 HAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVN-GGNKAD 582
Query: 589 SAGEASLNADSDQSLEHNLPDSPFASPTKSSVSAHQSFTT---TDTGVVATSSCSASHVG 645
SAGE + NADSDQS EHNLPDSPFAS TKS+ + T ++ SSC
Sbjct: 583 SAGEVTRNADSDQSGEHNLPDSPFASSTKSTAFFTATAATAIGSEGDFTTGSSC------ 636
Query: 646 ISAGTNAGGGINHLRPSTLDIPSPRD-FFSVSRLASDHGAIGM 687
+ G +A G N LRP TLDIPSPR FF + RL S+HGAIGM
Sbjct: 637 -NIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRL-SEHGAIGM 677
>Os07g0682400 Zinc finger, CCCH-type domain containing protein
Length = 682
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/703 (63%), Positives = 489/703 (69%), Gaps = 37/703 (5%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
MDAYEATKVVFSRIQALDPDHAAKIMG LLIQDHG+KEMIRLAFGPEALLH+VMA+ARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 61 LALLXXXX--XXXXXXXTVPAAHSPFLLSRQNSGR---GXXXXXXXXXXXXXXXXXXXXX 115
L LL AAHSPF+LSRQNSGR
Sbjct: 61 LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120
Query: 116 XXRSNGSVDEVVGAGEELIXXXXXXXXXXXXXXXXXXXXXDVLLDDFQLQEQLAFLNEGG 175
SNG+ +E+VG G+ELI D L+D+ QLQ+QLAFLNEGG
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPFFGG------DPLMDELQLQDQLAFLNEGG 174
Query: 176 VNPSHPLQGFDGAECRSXXXXXXXXXXXXXXXWANGGPGHRRSASVNELCLGGGSSDGFG 235
V H + FDG ECRS WANGGPGHRRSASV+ELCLGG +DG G
Sbjct: 175 VPAGHQMPMFDGGECRSPGGGDGGLFSYNLG-WANGGPGHRRSASVSELCLGG--ADGLG 231
Query: 236 WKPCLYYARGFCKNGSSCRFVHXXXXXXXXXXXXXXXXXEQQQCQDFLLRSKSQRLGPAA 295
WKPCLYYARG+CKNGS+CRFVH +QQCQDFL+RSKSQRL AA
Sbjct: 232 WKPCLYYARGYCKNGSACRFVHGGLPDDAAGKMDPSAV--EQQCQDFLIRSKSQRLAAAA 289
Query: 296 FPYSPTGSLPGSPSAATKCLSLLLQQQH--NDNQRXXXXXXLMLGGSDEAHKFMGRPRLD 353
FPYSPTGSLPGSPSAATKCLSLLLQQQ N++QR LMLGG DEAHKFMGRPRL+
Sbjct: 290 FPYSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALMLGG-DEAHKFMGRPRLE 348
Query: 354 RVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVY 413
R DFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVY
Sbjct: 349 RADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVY 408
Query: 414 PETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRK-HQG----DFSGCTTPTGLDGR 468
PETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRK HQ DFS CTTPTGLD R
Sbjct: 409 PETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQHQPGERVDFSSCTTPTGLDAR 468
Query: 469 DPFDLHQLGARMLQHSNSTNEMMLRRKXXXXXXXXXXXXXXXXHSRRLMDLQLLDLKNRX 528
DPFD+HQLGARMLQHSNS NEM+LRRK HSRRLM LQLLD K+R
Sbjct: 469 DPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDFKSR- 527
Query: 529 XXXXXXXXXXXXXXXXXFGSSQPLATTMVESPPDSGEQLKGTGYFTEERKMVNGGGDKEE 588
F +SQ A ESPPDSGE KG+G+ +K VN G DKEE
Sbjct: 528 ------AAAAPTPIGNPFSASQTAANATGESPPDSGELGKGSGFLLAHKKAVN-GADKEE 580
Query: 589 SAGEASL-NADSDQSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSS--CSASHVG 645
S GE+S N DSDQS+EHNLPDSPFASPTKS+ A F T+ + AT+S CSA++VG
Sbjct: 581 STGESSSPNTDSDQSVEHNLPDSPFASPTKSAGFARDPFAPTEAEISATASTGCSATYVG 640
Query: 646 ISAGTNAGGGINHLRPSTLDIPSPRD-FFSVSRLASDHGAIGM 687
I+ G + GG NHL PS LD+PSP+ FF +SRLASDHGAIGM
Sbjct: 641 INNGA-SNGGTNHLLPSALDMPSPKPYFFPMSRLASDHGAIGM 682
>Os11g0125700
Length = 401
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 107/159 (67%), Gaps = 11/159 (6%)
Query: 339 GSDEAHKFMGRP-RLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVR 397
GSD+ ++ RP ++D+ D + N +RQIYLTFP DS F +EDV NYFS+YG V DVR
Sbjct: 141 GSDDMQEYSSRPPQIDQSDLTN--NCSARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVR 198
Query: 398 IPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQGDFS 457
IPYQ+KRMFGFVTF Y +TVKLILAKGNPH+ICDARVLVKPYKEK KVP+K + S
Sbjct: 199 IPYQEKRMFGFVTFAYQKTVKLILAKGNPHYICDARVLVKPYKEKDKVPNKKFQQSDSPS 258
Query: 458 GCTTPTGLDGRDPFDL--HQLGARMLQHSNSTNEMMLRR 494
L R PFDL HQ+ ++ NE +R
Sbjct: 259 YMNHNRLLYSRVPFDLRRHQIDNKL------KNEFAMRE 291
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 47/62 (75%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
M AYEATKVVF+R+QAL+P+ A I+G+LL +D + +MI LA GP+ LL S++A+ R +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDKNEMDMIHLACGPDNLLQSIIAKVRTD 60
Query: 61 LA 62
L
Sbjct: 61 LT 62
>Os12g0123300
Length = 456
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/107 (67%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
Query: 339 GSDEAHKFMGRP-RLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVR 397
GSD+ ++ RP ++D+ D + N +RQIYLTFP DS F +EDV NYFS+YG V DVR
Sbjct: 141 GSDDMQEYSSRPPQIDQSDLTN--NCSARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVR 198
Query: 398 IPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGK 444
IPYQ+K MFGFVTF Y +TVKLILAKGNPH+ICDARVLVKPYKEK K
Sbjct: 199 IPYQEKCMFGFVTFAYQKTVKLILAKGNPHYICDARVLVKPYKEKDK 245
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 49/62 (79%)
Query: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
M AYEATKVVF+R+QAL+P+ A I+G+LL +D+ + +MIRLA GP+ LL S++A+ R +
Sbjct: 1 MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDNNEMDMIRLACGPDNLLQSIIAKVRTD 60
Query: 61 LA 62
L
Sbjct: 61 LT 62
>Os08g0126700 Zinc finger, CCCH-type domain containing protein
Length = 604
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 68/84 (80%)
Query: 365 SRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKG 424
S QIYLTFPA+STF E+DV+NYF YGPV DVRIP Q++RMFGFV+F PETV IL +
Sbjct: 372 SHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRR 431
Query: 425 NPHFICDARVLVKPYKEKGKVPDK 448
NPHFIC +RVLVKPY+EK K D+
Sbjct: 432 NPHFICGSRVLVKPYREKSKCVDR 455
>Os07g0583300
Length = 438
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 364 GSRQIYLTFPADSTFREEDVSNYFSI---------YGPVHDVRIPYQQKRMFGFVTFVYP 414
GS QIY+TFP S F ++DV NYF +GPV VRIPYQ+KRMFGFV+F+Y
Sbjct: 285 GSNQIYMTFPVHSKFTDDDVENYFKYCLNFIVTRQFGPVSGVRIPYQEKRMFGFVSFLYT 344
Query: 415 ETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKH-QGDFSGCTTPTGLDGRDPFDL 473
ETV+LIL+KG HFIC RVLVK Y EK ++ YRK+ Q D+ T G +
Sbjct: 345 ETVRLILSKGTAHFICGLRVLVKRYMEKSELRKIYRKNKQFDYREHRT----SGFGVTNE 400
Query: 474 HQLGARMLQHSNSTNEM 490
H +G M + S+ ++++
Sbjct: 401 HYIGNNMKKKSHRSDDL 417
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,321,115
Number of extensions: 845162
Number of successful extensions: 2697
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2661
Number of HSP's successfully gapped: 9
Length of query: 687
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 579
Effective length of database: 11,396,689
Effective search space: 6598682931
Effective search space used: 6598682931
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)