BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0321900 Os03g0321900|AK073317
         (183 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0321900  CMP/dCMP deaminase, zinc-binding domain contai...   350   2e-97
Os06g0489500  CMP/dCMP deaminase, zinc-binding domain contai...    67   7e-12

>Os03g0321900 CMP/dCMP deaminase, zinc-binding domain containing protein
          Length = 183

 Score =  350 bits (899), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 17  KFALDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDILLREWQGMGLDQPQ 76
           KFALDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDILLREWQGMGLDQPQ
Sbjct: 17  KFALDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDILLREWQGMGLDQPQ 76

Query: 77  VAEKFARCDLYVTCEPCIMCAMALSILGIREVYFGCANDKFGGCGSIMSLHQSSSAELSG 136
           VAEKFARCDLYVTCEPCIMCAMALSILGIREVYFGCANDKFGGCGSIMSLHQSSSAELSG
Sbjct: 77  VAEKFARCDLYVTCEPCIMCAMALSILGIREVYFGCANDKFGGCGSIMSLHQSSSAELSG 136

Query: 137 EEIPGPKGYKCTGGIMAEEAVALFRNFYEQGNPNAPKPHRPVRIAPQ 183
           EEIPGPKGYKCTGGIMAEEAVALFRNFYEQGNPNAPKPHRPVRIAPQ
Sbjct: 137 EEIPGPKGYKCTGGIMAEEAVALFRNFYEQGNPNAPKPHRPVRIAPQ 183



>Os06g0489500 CMP/dCMP deaminase, zinc-binding domain containing protein
          Length = 1590

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 26/178 (14%)

Query: 19   ALDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAI---DILLREWQGMGLDQP 75
            A D  EVPVG V+V++G++I+ G N     R++T HAE+  I      L+ W        
Sbjct: 1404 AADLWEVPVGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCIREASNKLKTW-------- 1455

Query: 76   QVAEKFARCDLYVTCEPCIMCAMALSILGIREVYFGCANDKFG----------GCGSIMS 125
                + A   LYVT EPC MCA A+    +  V +G  N   G          G G   S
Sbjct: 1456 ----RLADTTLYVTLEPCAMCAGAILQARVDTVVWGAPNKLLGADGSWVRLFPGDGQTSS 1511

Query: 126  LHQSSSAELSGEEIPGPKGYKCTGGIMAEEAVALFRNFYEQGNPNAPKPHRPVRIAPQ 183
            L  +++ + +G   P         GI++ E   + + F+        KP  P    PQ
Sbjct: 1512 LDSANTNQGAGPVHPFHPKISIRRGILSAECSEIMQQFFHL-RRKKQKPESPPHAHPQ 1568



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,204,189
Number of extensions: 253685
Number of successful extensions: 524
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,075,471
Effective search space: 1062641448
Effective search space used: 1062641448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)