Os03g0321900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CMP/dCMP deaminase, zinc-binding domain containing protein.
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Os03g0321900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CMP/dCMP deaminase, zinc-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.31 | 0.408 | 7.41 | -0.444 | 1.18 | 1.06 | 0.381 | -0.972 | -0.161 | 16.3 | 20.53 | 1291 | -- | -- |
| 77.18 | 0.409 | 7.38 | -0.257 | 1.18 | 1.17 | 0.425 | -- | -0.123 | 16.2 | 20.6 | 1240 | -- | -- |
| 75.67 | 0.405 | 7.41 | -0.438 | 1.19 | 1.05 | -- | -0.986 | -0.158 | 16.2 | 20.5 | 1241 | -- | -- |
| 77.76 | 0.411 | 7.38 | -0.257 | 1.19 | 1.18 | -- | -- | -0.121 | 16.2 | 20.6 | 1233 | -- | -- |
| 145.88 | 0.563 | 7.41 | -0.555 | -- | 1.05 | -- | -1.2 | -0.206 | -- | 20.5 | 1773 | -- | -- |
| 109.38 | 0.49 | 7.32 | 0.22 | 1.12 | -- | 0.73 | -- | 0.143 | 16.4 | -- | -- | -- | -- |
| 110.82 | 0.493 | 7.32 | 0.226 | 1.13 | -- | -- | -- | 0.147 | 16.4 | -- | -- | -- | -- |
| 148.53 | 0.568 | 7.38 | -0.332 | -- | 1.2 | -- | -- | -0.154 | -- | 20.46 | 1711 | -- | -- |
| 79.23 | 0.415 | 7.37 | -- | 1.19 | 1.08 | -- | -- | -0.0737 | 16.2 | 20.58 | 1233 | -- | -- |
| 178.89 | 0.625 | 7.31 | 0.181 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 112.16 | 0.495 | 7.33 | -- | 1.12 | -- | -- | -- | 0.122 | 16.4 | -- | -- | -- | -- |
| 150.9 | 0.572 | 7.36 | -- | -- | 1.06 | -- | -- | -0.0911 | -- | 20.45 | 1688 | -- | -- |
| 179.76 | 0.626 | 7.32 | -- | -- | -- | -- | -- | 0.0972 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 3 | 74.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 11 | 75.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 13 | 75.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 39 | 75.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 56 | 75.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 84 | 75.90 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 88 | 75.92 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 104 | 76.02 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 114 | 76.05 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 125 | 76.09 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 246 | 76.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 335 | 76.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 359 | 76.90 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 442 | 77.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 450 | 77.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 457 | 77.14 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 544 | 77.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 885 | 78.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 905 | 78.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 957 | 78.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 976 | 78.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |