BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0316900 Os03g0316900|AK069044
         (320 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0316900  Similar to NBD-like protein                         615   e-176
Os02g0810300  Similar to NBD-like protein                         281   5e-76

>Os03g0316900 Similar to NBD-like protein
          Length = 320

 Score =  615 bits (1587), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/320 (94%), Positives = 303/320 (94%)

Query: 1   MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGHRCLLLGSNGAGKTTILKILG 60
           MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGHRCLLLGSNGAGKTTILKILG
Sbjct: 1   MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGHRCLLLGSNGAGKTTILKILG 60

Query: 61  GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF 120
           GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
Sbjct: 61  GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF 120

Query: 121 GVVGVDPQRRDELIKILDIDLAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 180
           GVVGVDPQRRDELIKILDIDLAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV
Sbjct: 121 GVVGVDPQRRDELIKILDIDLAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 180

Query: 181 LARANLLTYLKKECEERGATIIYATHIFDGLDDWPTHIVYIARGKLQLALPLEKVKEMSQ 240
           LARANLLTYLKKECEERGATIIYATHIFDGLDDWPTHIVYIARGKLQLALPLEKVKEMSQ
Sbjct: 181 LARANLLTYLKKECEERGATIIYATHIFDGLDDWPTHIVYIARGKLQLALPLEKVKEMSQ 240

Query: 241 LSLMRTVESWLXXXXXXXXXXXXXXXXXGLPEFDKVTEGSRVIGDPAARAVNNGWAAGRL 300
           LSLMRTVESWL                 GLPEFDKVTEGSRVIGDPAARAVNNGWAAGRL
Sbjct: 241 LSLMRTVESWLRKERDEDRRRRKERKEKGLPEFDKVTEGSRVIGDPAARAVNNGWAAGRL 300

Query: 301 ASTVAGEENFIFSSNSVLRQ 320
           ASTVAGEENFIFSSNSVLRQ
Sbjct: 301 ASTVAGEENFIFSSNSVLRQ 320



>Os02g0810300 Similar to NBD-like protein
          Length = 292

 Score =  281 bits (718), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 146/249 (58%), Positives = 176/249 (70%), Gaps = 11/249 (4%)

Query: 5   VEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGHRCLLLGSNGAGKTTILKILGGKHM 64
           +E+S L F Y G         PPL       +  G RCLL+G+NG+GKTT+LKIL GKHM
Sbjct: 14  IEVSALQFDYDG--------QPPLFARFNLRIAPGSRCLLIGANGSGKTTLLKILAGKHM 65

Query: 65  VD-PSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIFGVV 123
           V    +VRVL  SAFHDT L  +GDL YLGG W R +  AG  V +Q D SAE MIFGV 
Sbjct: 66  VGGRDVVRVLNGSAFHDTQLVCNGDLSYLGGSWSRAIGSAG-DVPLQGDFSAEHMIFGVD 124

Query: 124 GVDPQRRDELIKILDIDLAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 183
           GVDP RR++L+ +LDIDL WRMHK SDGQRRRVQICMGLL P+KVLLLDEITVDLDV+ R
Sbjct: 125 GVDPVRREKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVDLDVVTR 184

Query: 184 ANLLTYLKKECEERGATIIYATHIFDGLDDWPTHIVYIARGKLQLALPLEKVKEM-SQLS 242
            +LL + K+ECE+R ATI+YATHIFDGL+ W T I YI  G+L+ +     V+E+ S  +
Sbjct: 185 MDLLDFFKEECEQREATIVYATHIFDGLESWATDIAYIQEGELRKSAKYSDVEELKSAKN 244

Query: 243 LMRTVESWL 251
           L+  VESWL
Sbjct: 245 LLSVVESWL 253



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,011,190
Number of extensions: 463111
Number of successful extensions: 1435
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1432
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)