Os02g0810300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBD-like protein.
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Os02g0810300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBD-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.07 | 0.244 | 9.43 | -1.08 | 0.505 | -0.852 | 0.132 | 0.722 | -0.591 | 5.27 | 21 | 1873 | -- | -- |
| 28.47 | 0.249 | 9.44 | -1.22 | 0.518 | -0.886 | 0.148 | -- | -0.604 | 4.82 | 21.2 | 2110 | -- | -- |
| 27.12 | 0.243 | 9.43 | -1.08 | 0.505 | -0.855 | -- | 0.713 | -0.591 | 5.26 | 20.97 | 1874 | -- | -- |
| 28.28 | 0.248 | 9.46 | -1.21 | 0.502 | -0.931 | -- | -- | -0.625 | 4.83 | 20.5 | 1995 | -- | -- |
| 40.43 | 0.296 | 9.43 | -1.07 | -- | -0.88 | -- | 0.641 | -0.574 | -- | 20.9 | 1885 | -- | -- |
| 49.09 | 0.328 | 9.51 | -1.67 | 0.518 | -- | 0.205 | -- | -0.869 | 5.43 | -- | -- | -- | -- |
| 49.19 | 0.328 | 9.51 | -1.67 | 0.519 | -- | -- | -- | -0.87 | 5.42 | -- | -- | -- | -- |
| 41.29 | 0.299 | 9.45 | -1.21 | -- | -0.94 | -- | -- | -0.601 | -- | 20.91 | 1887 | -- | -- |
| 35.14 | 0.276 | 9.39 | -- | 0.528 | -1.58 | -- | -- | -0.366 | 5.24 | 18.44 | 22697 | -- | -- |
| 63.24 | 0.372 | 9.51 | -1.65 | -- | -- | -- | -- | -0.857 | -- | -- | -- | -- | -- |
| 122.57 | 0.518 | 9.46 | -- | 0.492 | -- | -- | -- | -0.684 | 5.56 | -- | -- | -- | -- |
| 48.03 | 0.323 | 9.4 | -- | -- | -1.58 | -- | -- | -0.375 | -- | 16.44 | 47520 | -- | -- |
| 135.16 | 0.543 | 9.47 | -- | -- | -- | -- | -- | -0.674 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 2 | 26.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 21 | 27.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 23 | 27.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 38 | 27.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 15 |
| 43 | 27.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 54 | 27.72 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 57 | 27.73 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 90 | 27.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 98 | 27.88 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 100 | 27.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 145 | 27.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 16 |
| 153 | 28.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 159 | 28.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 190 | 28.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 10 |
| 194 | 28.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 196 | 28.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 220 | 28.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 238 | 28.14 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 326 | 28.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 346 | 28.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 387 | 28.37 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 541 | 28.58 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 593 | 28.64 | humidity | 50 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 712 | 28.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 719 | 28.81 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 751 | 28.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 755 | 28.87 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 766 | 28.89 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 788 | 28.92 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 817 | 28.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 825 | 28.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 832 | 28.98 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 836 | 28.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 8 | 16 |
| 882 | 29.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 899 | 29.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 939 | 29.11 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 946 | 29.11 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 950 | 29.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 965 | 29.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 977 | 29.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 16 |