Os03g0316900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBD-like protein.
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Os03g0316900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBD-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.74 | 0.398 | 10.5 | -1.04 | 1.31 | 0.788 | 0.274 | -0.13 | -0.507 | 6.4 | 78.33 | 558 | -- | -- |
| 71.75 | 0.395 | 10.5 | -1.03 | 1.32 | 0.778 | 0.313 | -- | -0.507 | 6.39 | 78.61 | 551 | -- | -- |
| 71.86 | 0.395 | 10.5 | -1.04 | 1.31 | 0.793 | -- | -0.359 | -0.511 | 6.37 | 78.51 | 543 | -- | -- |
| 71.97 | 0.395 | 10.5 | -1.03 | 1.31 | 0.755 | -- | -- | -0.51 | 6.38 | 79.1 | 551 | -- | -- |
| 117.49 | 0.505 | 10.5 | -1.02 | -- | 0.59 | -- | -0.024 | -0.497 | -- | 82 | 1312 | -- | -- |
| 80.67 | 0.421 | 10.5 | -0.942 | 0.934 | -- | -0.0942 | -- | -0.533 | 6.35 | -- | -- | -- | -- |
| 80.7 | 0.421 | 10.5 | -0.943 | 0.933 | -- | -- | -- | -0.532 | 6.36 | -- | -- | -- | -- |
| 117.49 | 0.505 | 10.5 | -1.02 | -- | 0.588 | -- | -- | -0.497 | -- | 82 | 1312 | -- | -- |
| 98.46 | 0.462 | 10.5 | -- | 1.29 | 0.686 | -- | -- | -0.444 | 6.44 | 132.2 | 520 | -- | -- |
| 125.91 | 0.524 | 10.5 | -0.919 | -- | -- | -- | -- | -0.512 | -- | -- | -- | -- | -- |
| 104.16 | 0.477 | 10.5 | -- | 0.92 | -- | -- | -- | -0.427 | 6.41 | -- | -- | -- | -- |
| 142.56 | 0.556 | 10.5 | -- | -- | 0.504 | -- | -- | -0.438 | -- | 92 | 1332 | -- | -- |
| 148.18 | 0.568 | 10.5 | -- | -- | -- | -- | -- | -0.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.36 | temperature | 25 | 30 | > th | dose independent | rect. | 19 | 1 |
| 3 | 66.96 | wind | 3 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 4 | 67.30 | wind | 3 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 17 | 69.39 | wind | 3 | 90 | < th | dose independent | rect. | 19 | 1 |
| 25 | 71.42 | humidity | 80 | 90 | > th | dose independent | rect. | 11 | 17 |
| 26 | 71.56 | humidity | 80 | 30 | > th | dose independent | rect. | 10 | 19 |
| 32 | 71.75 | humidity | 80 | 30 | > th | dose independent | rect. | 8 | 21 |
| 34 | 71.78 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 21 |
| 37 | 71.92 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 10 |
| 45 | 72.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 49 | 72.04 | humidity | 70 | 270 | > th | dose independent | rect. | 15 | 12 |
| 54 | 72.08 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 61 | 72.12 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 13 |
| 66 | 72.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 102 | 72.33 | humidity | 80 | 720 | < th | dose dependent | sin | 1 | NA |
| 141 | 72.39 | humidity | 70 | 720 | < th | dose dependent | rect. | 10 | 6 |
| 154 | 72.42 | humidity | 50 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 163 | 72.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 6 |
| 180 | 72.50 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 12 |
| 182 | 72.50 | humidity | 70 | 720 | > th | dose independent | rect. | 22 | 21 |
| 185 | 72.50 | humidity | 80 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 189 | 72.51 | humidity | 80 | 720 | < th | dose dependent | no | NA | NA |
| 192 | 72.51 | humidity | 80 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 205 | 72.53 | humidity | 80 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 234 | 72.57 | radiation | 30 | 720 | < th | dose independent | rect. | 22 | 21 |
| 245 | 72.59 | humidity | 60 | 720 | > th | dose independent | rect. | 7 | 10 |
| 254 | 72.60 | humidity | 80 | 90 | < th | dose independent | rect. | 12 | 20 |
| 287 | 72.65 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 302 | 72.67 | humidity | 60 | 720 | > th | dose independent | rect. | 22 | 19 |
| 323 | 72.69 | humidity | 50 | 270 | > th | dose dependent | rect. | 13 | 13 |
| 346 | 72.72 | humidity | 80 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 347 | 72.73 | humidity | 80 | 10 | < th | dose independent | rect. | 12 | 20 |
| 348 | 72.73 | humidity | 50 | 720 | > th | dose dependent | sin | 1 | NA |
| 352 | 72.73 | humidity | 70 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 362 | 72.75 | radiation | 30 | 720 | < th | dose independent | rect. | 7 | 12 |
| 382 | 72.76 | radiation | 30 | 720 | < th | dose independent | rect. | 7 | 18 |
| 437 | 72.83 | humidity | 80 | 90 | > th | dose independent | sin | 17 | NA |
| 449 | 72.85 | humidity | 70 | 720 | < th | dose independent | rect. | 9 | 9 |
| 459 | 72.86 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 20 |
| 486 | 72.88 | humidity | 70 | 720 | < th | dose independent | rect. | 6 | 12 |
| 507 | 72.89 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 12 |
| 529 | 72.91 | humidity | 50 | 90 | > th | dose dependent | sin | 16 | NA |
| 567 | 72.96 | humidity | 70 | 720 | < th | dose independent | sin | 0 | NA |
| 601 | 72.98 | wind | 3 | 10 | < th | dose dependent | rect. | 14 | 7 |
| 623 | 73.00 | humidity | 80 | 90 | < th | dose independent | sin | 17 | NA |
| 683 | 73.04 | humidity | 90 | 90 | < th | dose dependent | sin | 15 | NA |
| 775 | 73.13 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 800 | 73.15 | radiation | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 834 | 73.18 | radiation | 30 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 857 | 73.19 | radiation | 30 | 720 | < th | dose independent | rect. | 14 | 20 |
| 898 | 73.22 | humidity | 70 | 720 | < th | dose independent | rect. | 9 | 23 |
| 909 | 73.23 | humidity | 80 | 90 | < th | dose dependent | sin | 12 | NA |