BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0307100 Os03g0307100|AK102205
(938 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0307100 TolB, C-terminal domain containing protein 1716 0.0
Os07g0689400 TolB, C-terminal domain containing protein 943 0.0
>Os03g0307100 TolB, C-terminal domain containing protein
Length = 938
Score = 1716 bits (4445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/938 (90%), Positives = 847/938 (90%)
Query: 1 MSSLTILLQRACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHIVXXXXXX 60
MSSLTILLQRAC HIV
Sbjct: 1 MSSLTILLQRACLRFALLPVPPLRAPLRPPRRPLGLPRRSAMSSSAASRLSHIVAAAGGA 60
Query: 61 XXXXXXXXXXXXXXXXLAQEDDDLSSAMMGYRLPPKEIQDIVDAPPLPVLSFSPSKDKIL 120
LAQEDDDLSSAMMGYRLPPKEIQDIVDAPPLPVLSFSPSKDKIL
Sbjct: 61 AGESSEPPAAAAAASGLAQEDDDLSSAMMGYRLPPKEIQDIVDAPPLPVLSFSPSKDKIL 120
Query: 121 FLKRRALPPLSDLAKPEEKLAGVRIDGYSNTRSRMSFYTGIGIHKLMDDGTLGPEKVVHG 180
FLKRRALPPLSDLAKPEEKLAGVRIDGYSNTRSRMSFYTGIGIHKLMDDGTLGPEKVVHG
Sbjct: 121 FLKRRALPPLSDLAKPEEKLAGVRIDGYSNTRSRMSFYTGIGIHKLMDDGTLGPEKVVHG 180
Query: 181 YPEGARINFVTWSQDGRHLSFSVRVDEEDNTSGKLRLWIADVESGEARPLFKSPEIYLNA 240
YPEGARINFVTWSQDGRHLSFSVRVDEEDNTSGKLRLWIADVESGEARPLFKSPEIYLNA
Sbjct: 181 YPEGARINFVTWSQDGRHLSFSVRVDEEDNTSGKLRLWIADVESGEARPLFKSPEIYLNA 240
Query: 241 IFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKDEYD 300
IFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKDEYD
Sbjct: 241 IFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKDEYD 300
Query: 301 ADLFDYYATSQLVLASFDGTVKPIGPPAVYTSIDPSPDDKYLMISSIHRPYSYIVPCGRF 360
ADLFDYYATSQLVLASFDGTVKPIGPPAVYTSIDPSPDDKYLMISSIHRPYSYIVPCGRF
Sbjct: 301 ADLFDYYATSQLVLASFDGTVKPIGPPAVYTSIDPSPDDKYLMISSIHRPYSYIVPCGRF 360
Query: 361 PKKVELWTVDGEFIRELCDLPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQDGGD 420
PKKVELWTVDGEFIRELCDLPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQDGGD
Sbjct: 361 PKKVELWTVDGEFIRELCDLPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQDGGD 420
Query: 421 AKVEVSPRDIVYMENAEPINGEQPEILHKLDLRYAGTSWCDESLALVYESWYKTRKTRTW 480
AKVEVSPRDIVYMENAEPINGEQPEILHKLDLRYAGTSWCDESLALVYESWYKTRKTRTW
Sbjct: 421 AKVEVSPRDIVYMENAEPINGEQPEILHKLDLRYAGTSWCDESLALVYESWYKTRKTRTW 480
Query: 481 VISPDKKDVSPRILFDRSSEDVYSDPGSPMLRRTAMGTYVIAKVKKQDENTYILLNGMGA 540
VISPDKKDVSPRILFDRSSEDVYSDPGSPMLRRTAMGTYVIAKVKKQDENTYILLNGMGA
Sbjct: 481 VISPDKKDVSPRILFDRSSEDVYSDPGSPMLRRTAMGTYVIAKVKKQDENTYILLNGMGA 540
Query: 541 TPEGNVPFLDLFDINTGSKERIWQSDKEKYYETVVALMSDKTDGELPLEKLKILTSKESK 600
TPEGNVPFLDLFDINTGSKERIWQSDKEKYYETVVALMSDKTDGELPLEKLKILTSKESK
Sbjct: 541 TPEGNVPFLDLFDINTGSKERIWQSDKEKYYETVVALMSDKTDGELPLEKLKILTSKESK 600
Query: 601 TENTQYYLQIWPEKKQVQITDFPHPYPQLASLYKEMIRYQRKDGVQLTATLYLPPGYDPS 660
TENTQYYLQIWPEKKQVQITDFPHPYPQLASLYKEMIRYQRKDGVQLTATLYLPPGYDPS
Sbjct: 601 TENTQYYLQIWPEKKQVQITDFPHPYPQLASLYKEMIRYQRKDGVQLTATLYLPPGYDPS 660
Query: 661 QDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFPGIGATSPLLWLARGFAILSGPTIPIIG 720
QDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFPGIGATSPLLWLARGFAILSGPTIPIIG
Sbjct: 661 QDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEFPGIGATSPLLWLARGFAILSGPTIPIIG 720
Query: 721 EGDEEANDRYVEQLVTSXXXXXXXXXXXXXXHPDKIAVGGHSYGAFMTANLLAHAPHLFC 780
EGDEEANDRYVEQLVTS HPDKIAVGGHSYGAFMTANLLAHAPHLFC
Sbjct: 721 EGDEEANDRYVEQLVTSAEAAAEEVVRRGVAHPDKIAVGGHSYGAFMTANLLAHAPHLFC 780
Query: 781 CGIARSGAYNRTLTPFGFQNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNSG 840
CGIARSGAYNRTLTPFGFQNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNSG
Sbjct: 781 CGIARSGAYNRTLTPFGFQNEDRTLWEATNTYVEMSPFMSANKIKKPILLIHGEQDNNSG 840
Query: 841 TLTMQSDRFFNALKGHGALSRLVILPFESHGYSARESIMHVLWETDRWLQKYCLSGSSKT 900
TLTMQSDRFFNALKGHGALSRLVILPFESHGYSARESIMHVLWETDRWLQKYCLSGSSKT
Sbjct: 841 TLTMQSDRFFNALKGHGALSRLVILPFESHGYSARESIMHVLWETDRWLQKYCLSGSSKT 900
Query: 901 DSDSVADTENKTVXXXXXXXXXXXXXXXXFSSMQRSLL 938
DSDSVADTENKTV FSSMQRSLL
Sbjct: 901 DSDSVADTENKTVSASGGGAPCEGPEAEGFSSMQRSLL 938
>Os07g0689400 TolB, C-terminal domain containing protein
Length = 712
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/650 (68%), Positives = 538/650 (82%), Gaps = 1/650 (0%)
Query: 80 EDDDLSSAMMGYRLPPKEIQDIVDAPPLPVLSFSPSKDKILFLKRRALPPLSDLAKPEEK 139
E+DD++ + GYR PPK+IQ+I+D PP P SP +D+I+FL+R A+PPLS+L KPE
Sbjct: 64 EEDDVAGGL-GYRHPPKQIQEILDVPPNPSYLISPRRDRIMFLQRTAMPPLSELTKPEIV 122
Query: 140 LAGVRIDGYSNTRSRMSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQDGRHL 199
L+G+RID SN RSRMSFYTGI IH LMD GTLGP K VHGY +GA+INFVTWS DG+H+
Sbjct: 123 LSGIRIDPGSNMRSRMSFYTGIIIHDLMDSGTLGPAKEVHGYADGAKINFVTWSPDGQHM 182
Query: 200 SFSVRVDEEDNTSGKLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLVCTIP 259
+F+VR +++ + S L LW+A+ ESGEARPL S +I LNAIF+ FVWVN+ST+LVCTIP
Sbjct: 183 AFTVRYEDKVDNSVNLSLWVANAESGEARPLCISEDIRLNAIFELFVWVNDSTVLVCTIP 242
Query: 260 LSRGAPPQKPSVPSGPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLASFDG 319
SRG PP+KP VP GP+I+SNE NVVQ+R +++LKD ++ +LFDYYATSQL+L S DG
Sbjct: 243 SSRGCPPKKPLVPFGPRIRSNEHKNVVQMRATKEMLKDLHEEELFDYYATSQLILLSLDG 302
Query: 320 TVKPIGPPAVYTSIDPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIRELCD 379
TVKPI PPA+YT++DPSPD+KYLM++S+HRPYS V RFPKKVELWTVDG FIRE+CD
Sbjct: 303 TVKPIAPPAIYTALDPSPDEKYLMLTSVHRPYSSTVSYKRFPKKVELWTVDGTFIREVCD 362
Query: 380 LPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMENAEPI 439
LPLAEDIPI + SVRKGKR I WRPD P+ LYWVE QDGGDA VEVSPRDIVYME A+P+
Sbjct: 363 LPLAEDIPITSGSVRKGKRLISWRPDMPSTLYWVEAQDGGDANVEVSPRDIVYMELADPL 422
Query: 440 NGEQPEILHKLDLRYAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILFDRSS 499
NGE+P++L KLDLRY SWC+ S ALVYE WY+TR+TRTWVISPD KDVSPR+LF+RSS
Sbjct: 423 NGEKPQVLLKLDLRYRRISWCNGSQALVYEHWYRTRRTRTWVISPDCKDVSPRVLFERSS 482
Query: 500 EDVYSDPGSPMLRRTAMGTYVIAKVKKQDENTYILLNGMGATPEGNVPFLDLFDINTGSK 559
ED YS+PGSPM+ RT GT+VIAK+K E TYILL G GATP+G++PFLDL +INTG K
Sbjct: 483 EDAYSNPGSPMMCRTPAGTFVIAKIKTNYEGTYILLKGKGATPKGSIPFLDLLNINTGVK 542
Query: 560 ERIWQSDKEKYYETVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEKKQVQI 619
ERIW+S KEKYYE+V+ALMS E+ L LK+L SKES+ E TQYY++ WP+K QVQI
Sbjct: 543 ERIWESSKEKYYESVLALMSYNPKCEIQLNHLKLLVSKESRMEPTQYYIKAWPDKTQVQI 602
Query: 620 TDFPHPYPQLASLYKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPGEFKSK 679
T++ HPYPQLA L KE+IRYQR DGV+LTATLYLPPGYDPS+D PLPCL+WSYPGEFKS+
Sbjct: 603 TNYSHPYPQLALLQKEVIRYQRVDGVKLTATLYLPPGYDPSKDEPLPCLIWSYPGEFKSR 662
Query: 680 DAAGQVRGSPNEFPGIGATSPLLWLARGFAILSGPTIPIIGEGDEEANDR 729
+AAGQVR SPN+F I + PLLWLARGFAIL+ PTIPIIGE D+EANDR
Sbjct: 663 EAAGQVRRSPNKFARIRSNFPLLWLARGFAILADPTIPIIGERDQEANDR 712
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,279,725
Number of extensions: 1475789
Number of successful extensions: 2961
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2958
Number of HSP's successfully gapped: 2
Length of query: 938
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 828
Effective length of database: 11,292,261
Effective search space: 9349992108
Effective search space used: 9349992108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)