Os03g0307100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TolB, C-terminal domain containing protein.
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Os03g0307100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TolB, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.55 | 0.202 | 14.4 | 2.16 | 1.39 | 68.7 | 0.212 | 142 | 0.104 | 15.6 | 15 | 4836 | -- | -- |
| 20.03 | 0.21 | 13.5 | -0.0285 | 1.39 | 0.967 | 0.232 | -- | 0.0606 | 15.6 | 15 | 4836 | -- | -- |
| 18.68 | 0.201 | 14.4 | 2.16 | 1.39 | 68.7 | -- | 142 | 0.104 | 15.6 | 15 | 4837 | -- | -- |
| 20.18 | 0.209 | 13.5 | 0.106 | 1.38 | 0.555 | -- | -- | 0.0982 | 15.7 | 17.3 | 6098 | -- | -- |
| 125.36 | 0.521 | 14.4 | 2.15 | -- | 69 | -- | 142 | 0.0706 | -- | 14.99 | 4318 | -- | -- |
| 21.81 | 0.219 | 13.5 | -0.067 | 1.38 | -- | 0.326 | -- | 0.0503 | 15.7 | -- | -- | -- | -- |
| 22.13 | 0.22 | 13.5 | -0.0618 | 1.38 | -- | -- | -- | 0.0522 | 15.7 | -- | -- | -- | -- |
| 108.38 | 0.487 | 13.5 | -0.343 | -- | -0.986 | -- | -- | -0.192 | -- | 27.6 | 1105 | -- | -- |
| 20.4 | 0.21 | 13.5 | -- | 1.38 | 0.471 | -- | -- | 0.0866 | 15.7 | 17.13 | 6099 | -- | -- |
| 127.79 | 0.528 | 13.5 | -0.119 | -- | -- | -- | -- | 0.0155 | -- | -- | -- | -- | -- |
| 22.23 | 0.221 | 13.5 | -- | 1.38 | -- | -- | -- | 0.0591 | 15.7 | -- | -- | -- | -- |
| 100.22 | 0.466 | 13.5 | -- | -- | -1.35 | -- | -- | -0.123 | -- | 34.9 | 120 | -- | -- |
| 128.17 | 0.528 | 13.5 | -- | -- | -- | -- | -- | 0.0287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.75 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 2 | 17.77 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 5 | 17.92 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 7 | 18.02 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 12 |
| 8 | 18.05 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 9 | 18.05 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 15 | 18.14 | temperature | 20.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 17 | 18.14 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 21 | 13 |
| 24 | 18.15 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 21 | 9 |
| 45 | 18.18 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 23 | 5 |
| 55 | 18.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 12 |
| 67 | 18.20 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 4 |
| 81 | 18.21 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 84 | 18.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 95 | 18.22 | temperature | 20.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 115 | 18.24 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 116 | 18.24 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 119 | 18.25 | radiation | 10.0 | 720 | < th | dose independent | rect. | 17 | 4 |
| 154 | 18.32 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 11 |
| 177 | 18.35 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 2 |
| 178 | 18.35 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 185 | 18.35 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 12 |
| 188 | 18.36 | temperature | 20.0 | 270 | < th | dose independent | rect. | 19 | 13 |
| 204 | 18.38 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 11 |
| 267 | 18.45 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 17 | 4 |
| 347 | 18.52 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 20 |
| 392 | 18.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 11 |
| 397 | 18.57 | temperature | 20.0 | 270 | < th | dose independent | sin | 12 | NA |
| 410 | 18.58 | temperature | 20.0 | 270 | > th | dose independent | sin | 10 | NA |
| 412 | 18.58 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 19 | 11 |
| 462 | 18.62 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 491 | 18.63 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 525 | 18.65 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 543 | 18.66 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 10 |
| 544 | 18.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 13 |
| 546 | 18.66 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 550 | 18.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 594 | 18.68 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 603 | 18.68 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 638 | 18.70 | radiation | 10.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 665 | 18.72 | radiation | 10.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 672 | 18.73 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 689 | 18.75 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 731 | 18.77 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 732 | 18.77 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 775 | 18.80 | wind | 7.0 | 720 | < th | dose independent | rect. | 21 | 12 |
| 789 | 18.81 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 12 |
| 818 | 18.83 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 13 |
| 845 | 18.84 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 12 |
| 846 | 18.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 869 | 18.85 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 5 |
| 876 | 18.85 | temperature | 15.0 | 720 | > th | dose independent | rect. | 13 | 20 |
| 881 | 18.85 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 22 | 9 |
| 900 | 18.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 13 |
| 903 | 18.86 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 906 | 18.86 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 946 | 18.87 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 948 | 18.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 7 |
| 980 | 18.89 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 6 |