BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0306800 Os03g0306800|AK103722
         (131 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0306800  Similar to CP12 (Fragment)                          189   4e-49
Os01g0303000  Similar to CP12 (Fragment)                          112   6e-26

>Os03g0306800 Similar to CP12 (Fragment)
          Length = 131

 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 98/131 (74%)

Query: 1   MATILAVAAMATFQXXXXXXXXXXXXXXVRRNVVSFXXXXXXXXXXXXXXXXXXXSPTPP 60
           MATILAVAAMATFQ              VRRNVVSF                   SPTPP
Sbjct: 1   MATILAVAAMATFQAPTTLPGPLAPTLPVRRNVVSFAGRRQGRALGRLAVVVAAGSPTPP 60

Query: 61  ELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDN 120
           ELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDN
Sbjct: 61  ELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDN 120

Query: 121 PETDECRTYED 131
           PETDECRTYED
Sbjct: 121 PETDECRTYED 131



>Os01g0303000 Similar to CP12 (Fragment)
          Length = 124

 Score =  112 bits (281), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%), Gaps = 1/75 (1%)

Query: 58  TPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEVEELSAAASHARDR-KKDSDPLEEY 116
           TPP+++ K+SESI +A+E CA D   GECAAAWDEVEELSAAASHARD+ K+ SDPLE Y
Sbjct: 50  TPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEAY 109

Query: 117 CKDNPETDECRTYED 131
           CKDNPETDECRTY++
Sbjct: 110 CKDNPETDECRTYDN 124



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.123    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,804,945
Number of extensions: 139383
Number of successful extensions: 604
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 150 (62.4 bits)